Variant report

Variant	rs17024815
Chromosome Location	chr3:86112332-86112333
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs12107344	0.83[AMR][1000 genomes]
rs13340105	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs5014408	0.87[ASW][hapmap];0.91[LWK][hapmap];1.00[YRI][hapmap]
rs73136130	0.89[AFR][1000 genomes]
rs7434109	0.83[YRI][hapmap]
rs9784262	0.86[ASW][hapmap];0.95[LWK][hapmap]
rs9968078	0.86[ASW][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532629	chr3:85763873-86608579	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs17024815	CADM2	cis	lymphoblastoid	seeQTL

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:86111000-86119600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr3:86112200-86112400	Flanking Active TSS	Pancreatic Islets	Pancreatic Islet

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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