Variant report

Variant	rs17026531
Chromosome Location	chr4:150833191-150833192
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10008836	1.00[AMR][1000 genomes]
rs16998785	1.00[AMR][1000 genomes]
rs16998786	1.00[AMR][1000 genomes]
rs17026378	1.00[AMR][1000 genomes]
rs17026401	1.00[AMR][1000 genomes]
rs17026402	1.00[AMR][1000 genomes]
rs17026403	1.00[AMR][1000 genomes]
rs17026413	1.00[AMR][1000 genomes]
rs17026415	1.00[AMR][1000 genomes]
rs17026417	1.00[AMR][1000 genomes]
rs17026423	1.00[AMR][1000 genomes]
rs17026455	1.00[AMR][1000 genomes]
rs17026497	1.00[AMR][1000 genomes]
rs17026502	1.00[AMR][1000 genomes]
rs17026522	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17026575	1.00[AMR][1000 genomes]
rs17026579	1.00[AMR][1000 genomes]
rs17026590	1.00[AMR][1000 genomes]
rs17631473	1.00[AMR][1000 genomes]
rs17631491	1.00[AMR][1000 genomes]
rs17687941	1.00[AMR][1000 genomes]
rs17687953	1.00[AMR][1000 genomes]
rs57311026	1.00[AMR][1000 genomes]
rs58033334	1.00[AMR][1000 genomes]
rs58496404	1.00[AMR][1000 genomes]
rs61161288	1.00[AMR][1000 genomes]
rs73857713	1.00[AMR][1000 genomes]
rs73857714	1.00[AMR][1000 genomes]
rs73857716	1.00[AMR][1000 genomes]
rs73857729	1.00[AMR][1000 genomes]
rs73857731	1.00[AMR][1000 genomes]
rs73857732	1.00[AMR][1000 genomes]
rs73857733	1.00[AMR][1000 genomes]
rs73857734	1.00[AMR][1000 genomes]
rs73857735	1.00[AMR][1000 genomes]
rs73857736	1.00[AMR][1000 genomes]
rs73857737	1.00[AMR][1000 genomes]
rs73857738	1.00[AMR][1000 genomes]
rs73857743	1.00[AMR][1000 genomes]
rs73857747	1.00[AMR][1000 genomes]
rs7683266	1.00[AMR][1000 genomes]
rs7683269	1.00[AMR][1000 genomes]
rs7688067	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1026797	chr4:150246932-151217137	Bivalent Enhancer Enhancers Strong transcription Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv1016169	chr4:150670127-150903827	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv537299	chr4:150670127-150903827	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv880254	chr4:150712923-150852782	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv880255	chr4:150777012-150874830	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv932022	chr4:150831733-151419552	Enhancers Weak transcription Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:150832200-150833200	Weak transcription	Muscle Satellite Cultured Cells	--
2	chr4:150832200-150833400	Enhancers	Rectal Mucosa Donor 29	rectum
3	chr4:150833000-150833400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr4:150833000-150833600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr4:150833000-150833600	Enhancers	HUVEC	blood vessel
6	chr4:150833000-150834000	Weak transcription	Rectal Mucosa Donor 31	rectum

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