Variant report

Variant	rs17026402
Chromosome Location	chr4:150659753-150659754
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs16998785	1.00[AMR][1000 genomes]
rs16998786	1.00[AMR][1000 genomes]
rs17026347	1.00[AMR][1000 genomes]
rs17026378	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17026401	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17026403	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17026413	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17026415	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17026417	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17026423	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17026455	1.00[AMR][1000 genomes]
rs17026497	1.00[AMR][1000 genomes]
rs17026502	1.00[AMR][1000 genomes]
rs17026522	1.00[AMR][1000 genomes]
rs17026531	1.00[AMR][1000 genomes]
rs17026575	1.00[AMR][1000 genomes]
rs17026579	1.00[AMR][1000 genomes]
rs17026590	1.00[AMR][1000 genomes]
rs17631473	1.00[AMR][1000 genomes]
rs17631491	1.00[AMR][1000 genomes]
rs17687941	1.00[AMR][1000 genomes]
rs17687953	1.00[AMR][1000 genomes]
rs55970465	1.00[AMR][1000 genomes]
rs57311026	1.00[AMR][1000 genomes]
rs58033334	1.00[AMR][1000 genomes]
rs58496404	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61161288	1.00[AMR][1000 genomes]
rs73857713	1.00[AMR][1000 genomes]
rs73857714	1.00[AMR][1000 genomes]
rs73857716	1.00[AMR][1000 genomes]
rs73857729	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73857731	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73857732	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73857733	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73857734	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73857735	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73857736	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73857737	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73857738	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73857743	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73857747	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7683266	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7683269	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7688067	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1026797	chr4:150246932-151217137	Bivalent Enhancer Enhancers Strong transcription Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv1023082	chr4:150548838-150674670	Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:150659200-150660000	Enhancers	HUES48 Cell Line	embryonic stem cell
2	chr4:150659200-150660000	Enhancers	HUES6 Cell Line	embryonic stem cell
3	chr4:150659400-150659800	Enhancers	ES-I3 Cell Line	embryonic stem cell
4	chr4:150659400-150659800	Enhancers	H1 Cell Line	embryonic stem cell
5	chr4:150659400-150659800	Enhancers	Fetal Muscle Leg	muscle
6	chr4:150659400-150660000	Enhancers	Adipose Nuclei	Adipose

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