Variant report

Variant	rs55970465
Chromosome Location	chr4:150496751-150496752
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs17026249	0.82[AFR][1000 genomes]
rs17026294	0.88[AFR][1000 genomes]
rs17026347	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17026378	1.00[AMR][1000 genomes]
rs17026401	1.00[AMR][1000 genomes]
rs17026402	1.00[AMR][1000 genomes]
rs17026403	1.00[AMR][1000 genomes]
rs17026413	1.00[AMR][1000 genomes]
rs17026415	1.00[AMR][1000 genomes]
rs17026417	1.00[AMR][1000 genomes]
rs17026423	1.00[AMR][1000 genomes]
rs58496404	1.00[AMR][1000 genomes]
rs61161288	1.00[AMR][1000 genomes]
rs73857713	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73857714	1.00[AMR][1000 genomes]
rs73857716	1.00[AMR][1000 genomes]
rs73857729	1.00[AMR][1000 genomes]
rs73857731	1.00[AMR][1000 genomes]
rs73857732	1.00[AMR][1000 genomes]
rs73857733	1.00[AMR][1000 genomes]
rs73857734	1.00[AMR][1000 genomes]
rs73857735	1.00[AMR][1000 genomes]
rs73857736	1.00[AMR][1000 genomes]
rs73857737	1.00[AMR][1000 genomes]
rs73857738	1.00[AMR][1000 genomes]
rs73857743	1.00[AMR][1000 genomes]
rs73857747	1.00[AMR][1000 genomes]
rs73859742	0.82[AFR][1000 genomes]
rs73859753	0.88[AFR][1000 genomes]
rs73859756	0.88[AFR][1000 genomes]
rs7678251	1.00[AFR][1000 genomes]
rs7683266	1.00[AMR][1000 genomes]
rs7683269	1.00[AMR][1000 genomes]
rs7688067	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016977	chr4:150173255-150605595	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv537298	chr4:150173255-150605595	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1026797	chr4:150246932-151217137	Bivalent Enhancer Enhancers Strong transcription Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	nsv880250	chr4:150317071-150554591	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv880251	chr4:150348995-150520884	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv880252	chr4:150348995-150554591	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv880253	chr4:150398982-150655652	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:150495800-150497000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr4:150495800-150497400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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