Variant report

Variant	rs73857713
Chromosome Location	chr4:150629328-150629329
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs16998785	1.00[AMR][1000 genomes]
rs17026294	0.88[AFR][1000 genomes]
rs17026347	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17026378	1.00[AMR][1000 genomes]
rs17026401	1.00[AMR][1000 genomes]
rs17026402	1.00[AMR][1000 genomes]
rs17026403	1.00[AMR][1000 genomes]
rs17026413	1.00[AMR][1000 genomes]
rs17026415	1.00[AMR][1000 genomes]
rs17026417	1.00[AMR][1000 genomes]
rs17026423	1.00[AMR][1000 genomes]
rs17026455	1.00[AMR][1000 genomes]
rs17026497	1.00[AMR][1000 genomes]
rs17026502	1.00[AMR][1000 genomes]
rs17026522	1.00[AMR][1000 genomes]
rs17026531	1.00[AMR][1000 genomes]
rs17631473	1.00[AMR][1000 genomes]
rs17631491	1.00[AMR][1000 genomes]
rs17687941	1.00[AMR][1000 genomes]
rs17687953	1.00[AMR][1000 genomes]
rs55970465	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57311026	1.00[AMR][1000 genomes]
rs58033334	1.00[AMR][1000 genomes]
rs58496404	1.00[AMR][1000 genomes]
rs61161288	1.00[AMR][1000 genomes]
rs73857714	1.00[AMR][1000 genomes]
rs73857716	1.00[AMR][1000 genomes]
rs73857729	1.00[AMR][1000 genomes]
rs73857731	1.00[AMR][1000 genomes]
rs73857732	1.00[AMR][1000 genomes]
rs73857733	1.00[AMR][1000 genomes]
rs73857734	1.00[AMR][1000 genomes]
rs73857735	1.00[AMR][1000 genomes]
rs73857736	1.00[AMR][1000 genomes]
rs73857737	1.00[AMR][1000 genomes]
rs73857738	1.00[AMR][1000 genomes]
rs73857743	1.00[AMR][1000 genomes]
rs73857747	1.00[AMR][1000 genomes]
rs73859753	0.88[AFR][1000 genomes]
rs73859756	0.88[AFR][1000 genomes]
rs7678251	1.00[AFR][1000 genomes]
rs7683266	1.00[AMR][1000 genomes]
rs7683269	1.00[AMR][1000 genomes]
rs7688067	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1026797	chr4:150246932-151217137	Bivalent Enhancer Enhancers Strong transcription Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv880253	chr4:150398982-150655652	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1023082	chr4:150548838-150674670	Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
4	nsv964730	chr4:150624934-150633213	Enhancers Weak transcription Active TSS	lncRNA	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:150624000-150629800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr4:150628000-150630600	Enhancers	HUVEC	blood vessel
3	chr4:150628200-150630600	Enhancers	Fetal Heart	heart
4	chr4:150628600-150629600	Weak transcription	NHEK	skin
5	chr4:150628600-150629800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr4:150628600-150631000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr4:150628600-150631200	Enhancers	Hela-S3	cervix
8	chr4:150628600-150632400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
9	chr4:150628800-150629800	Weak transcription	NH-A	brain
10	chr4:150628800-150636200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr4:150629000-150630600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr4:150629000-150631200	Enhancers	HMEC	breast
13	chr4:150629000-150633200	Weak transcription	Right Atrium	heart
14	chr4:150629200-150629600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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