Variant report

Variant	rs17027043
Chromosome Location	chr3:89626983-89626984
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs11915277	0.83[ASN][1000 genomes]
rs12107626	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12374054	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13089713	1.00[CHB][hapmap]
rs17026915	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs17027041	0.91[ASN][1000 genomes]
rs1982096	1.00[CHB][hapmap];0.89[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs41404046	0.83[ASN][1000 genomes]
rs55902329	0.83[ASN][1000 genomes]
rs56035503	0.83[ASN][1000 genomes]
rs56038553	0.83[ASN][1000 genomes]
rs56855556	0.83[ASN][1000 genomes]
rs57668063	0.83[ASN][1000 genomes]
rs59776964	0.83[ASN][1000 genomes]
rs6775558	0.83[ASN][1000 genomes]
rs6780506	0.82[CHB][hapmap];0.83[ASN][1000 genomes]
rs6786215	0.83[ASN][1000 genomes]
rs72925618	0.83[ASN][1000 genomes]
rs72925631	0.83[ASN][1000 genomes]
rs72925647	0.83[ASN][1000 genomes]
rs72925649	0.83[ASN][1000 genomes]
rs7630914	0.83[ASN][1000 genomes]
rs7635408	0.83[ASN][1000 genomes]
rs7635646	0.83[ASN][1000 genomes]
rs763900	0.83[ASN][1000 genomes]
rs763901	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1008018	chr3:89382031-90254063	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Strong transcription Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv536639	chr3:89382031-90254063	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1010932	chr3:89424428-90192503	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv590952	chr3:89493167-89727198	Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv1010021	chr3:89521983-90141988	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv530024	chr3:89548440-90304841	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
7	nsv428743	chr3:89584946-89689096	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:89626000-89627200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr3:89626600-89628000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr3:89626800-89627000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr3:89626800-89627200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr3:89626800-89627200	Enhancers	Brain Hippocampus Middle	brain
6	chr3:89626800-89627600	Enhancers	Fetal Kidney	kidney
7	chr3:89626800-89627800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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