Variant report

Variant	rs17027827
Chromosome Location	chr4:152645158-152645159
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs17027671	1.00[AMR][1000 genomes]
rs17027832	1.00[AMR][1000 genomes]
rs60323168	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73862271	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv508322	chr4:152617079-152678951	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv432644	chr4:152635395-153023402	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:74 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:152591200-152646800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
2	chr4:152598400-152648200	Weak transcription	HMEC	breast
3	chr4:152609800-152646200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
4	chr4:152612000-152651000	Weak transcription	K562	blood
5	chr4:152614600-152651200	Weak transcription	Muscle Satellite Cultured Cells	--
6	chr4:152615000-152651000	Weak transcription	HSMM	muscle
7	chr4:152616600-152665400	Weak transcription	NHDF-Ad	bronchial
8	chr4:152621400-152651600	Weak transcription	Small Intestine	intestine
9	chr4:152623000-152646200	Weak transcription	Fetal Lung	lung
10	chr4:152623200-152648200	Weak transcription	NHEK	skin
11	chr4:152624000-152645600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
12	chr4:152624000-152646400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr4:152625000-152651000	Weak transcription	Primary hematopoietic stem cells	blood
14	chr4:152629000-152658800	Weak transcription	Pancreas	Pancrea
15	chr4:152629200-152657400	Weak transcription	Duodenum Smooth Muscle	Duodenum
16	chr4:152629200-152681400	Weak transcription	Colonic Mucosa	Colon
17	chr4:152629400-152645600	Weak transcription	Colon Smooth Muscle	Colon
18	chr4:152629400-152648200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr4:152629400-152651200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr4:152629400-152651200	Weak transcription	Duodenum Mucosa	Duodenum
21	chr4:152629400-152681200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
22	chr4:152629600-152648400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr4:152631200-152651200	Weak transcription	Skeletal Muscle Female	skeletal muscle
24	chr4:152633400-152657000	Weak transcription	HUES64 Cell Line	embryonic stem cell
25	chr4:152636600-152647200	Weak transcription	Rectal Mucosa Donor 29	rectum
26	chr4:152636600-152651000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr4:152636600-152651000	Weak transcription	Rectal Mucosa Donor 31	rectum
28	chr4:152638000-152648400	Weak transcription	Primary B cells from cord blood	blood
29	chr4:152638000-152651600	Weak transcription	Ovary	ovary
30	chr4:152638200-152646200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
31	chr4:152638200-152649600	Weak transcription	GM12878-XiMat	blood
32	chr4:152638200-152651600	Weak transcription	Fetal Intestine Large	intestine
33	chr4:152640200-152648800	Weak transcription	Primary T helper cells PMA-I stimulated	--
34	chr4:152640400-152645800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
35	chr4:152640600-152646200	Weak transcription	Primary T cells fromperipheralblood	blood
36	chr4:152640600-152658800	Weak transcription	Lung	lung
37	chr4:152640800-152645800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
38	chr4:152640800-152646200	Weak transcription	Spleen	Spleen
39	chr4:152640800-152651200	Weak transcription	Sigmoid Colon	Sigmoid Colon
40	chr4:152640800-152651400	Weak transcription	Gastric	stomach
41	chr4:152640800-152658800	Weak transcription	Right Atrium	heart
42	chr4:152641000-152645800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
43	chr4:152641000-152646400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
44	chr4:152641000-152657000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
45	chr4:152641000-152657000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
46	chr4:152641000-152657400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
47	chr4:152641200-152657600	Weak transcription	Primary B cells from peripheral blood	blood
48	chr4:152641400-152645600	Weak transcription	Left Ventricle	heart
49	chr4:152641400-152647000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
50	chr4:152641400-152651000	Weak transcription	HepG2	liver

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