Variant report

Variant	rs17027832
Chromosome Location	chr4:152666022-152666023
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:152664924..152667297-chr4:152847686..152849611,2	K562	blood:
2	chr4:152664298..152671404-chr4:152680286..152684631,9	K562	blood:
3	chr4:152650161..152652116-chr4:152663866..152666742,2	K562	blood:
4	chr4:152663996..152666739-chr4:152680173..152683735,4	K562	blood:
5	chr4:152661372..152664044-chr4:152665414..152668096,2	MCF-7	breast:
6	chr4:152597649..152600627-chr4:152664446..152666064,2	K562	blood:

Variant related genes	Relation type
ENSG00000059691	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs17027671	1.00[AMR][1000 genomes]
rs17027827	1.00[AMR][1000 genomes]
rs60323168	1.00[AMR][1000 genomes]
rs73862271	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv508322	chr4:152617079-152678951	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv432644	chr4:152635395-153023402	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:106 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:152629200-152681400	Weak transcription	Colonic Mucosa	Colon
2	chr4:152629400-152681200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr4:152644600-152666600	Weak transcription	Stomach Smooth Muscle	stomach
4	chr4:152651800-152667200	Weak transcription	Gastric	stomach
5	chr4:152651800-152681400	Weak transcription	Rectal Mucosa Donor 31	rectum
6	chr4:152657800-152674000	Weak transcription	Brain Hippocampus Middle	brain
7	chr4:152657800-152677600	Weak transcription	Brain Anterior Caudate	brain
8	chr4:152658000-152666600	Weak transcription	Brain Cingulate Gyrus	brain
9	chr4:152658200-152667200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr4:152658400-152674200	Weak transcription	Fetal Muscle Trunk	muscle
11	chr4:152658600-152674000	Weak transcription	Primary T cells fromperipheralblood	blood
12	chr4:152658600-152681200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
13	chr4:152659000-152674000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
14	chr4:152659000-152681400	Weak transcription	Pancreas	Pancrea
15	chr4:152659200-152673800	Weak transcription	Duodenum Smooth Muscle	Duodenum
16	chr4:152659200-152674200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
17	chr4:152659200-152674400	Weak transcription	Right Ventricle	heart
18	chr4:152659400-152668200	Weak transcription	HepG2	liver
19	chr4:152659400-152674000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr4:152659400-152674200	Weak transcription	Duodenum Mucosa	Duodenum
21	chr4:152659400-152674600	Weak transcription	Rectal Mucosa Donor 29	rectum
22	chr4:152659400-152675200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
23	chr4:152659400-152675400	Weak transcription	Colon Smooth Muscle	Colon
24	chr4:152659400-152677200	Weak transcription	Sigmoid Colon	Sigmoid Colon
25	chr4:152659400-152678400	Weak transcription	Fetal Stomach	stomach
26	chr4:152659400-152681400	Weak transcription	Thymus	Thymus
27	chr4:152659600-152668000	Weak transcription	Lung	lung
28	chr4:152659600-152668400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
29	chr4:152659600-152673800	Weak transcription	Fetal Thymus	thymus
30	chr4:152659600-152674200	Weak transcription	Aorta	Aorta
31	chr4:152659600-152674800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
32	chr4:152659600-152681200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
33	chr4:152659800-152681400	Weak transcription	Spleen	Spleen
34	chr4:152660000-152674200	Weak transcription	Primary hematopoietic stem cells	blood
35	chr4:152660200-152674200	Weak transcription	Esophagus	oesophagus
36	chr4:152660600-152673800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
37	chr4:152660800-152667200	Weak transcription	Right Atrium	heart
38	chr4:152660800-152667200	Weak transcription	Skeletal Muscle Male	skeletal muscle
39	chr4:152660800-152671400	Weak transcription	Primary monocytes fromperipheralblood	blood
40	chr4:152660800-152674200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
41	chr4:152660800-152675000	Weak transcription	Left Ventricle	heart
42	chr4:152660800-152681000	Weak transcription	Fetal Lung	lung
43	chr4:152661000-152667200	Weak transcription	Psoas Muscle	Psoas
44	chr4:152661200-152670800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
45	chr4:152661600-152666600	Weak transcription	Adipose Nuclei	Adipose
46	chr4:152661600-152674200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
47	chr4:152661600-152674800	Weak transcription	Dnd41	blood
48	chr4:152661800-152672200	Weak transcription	Primary B cells from cord blood	blood
49	chr4:152662000-152667600	Weak transcription	Primary T helper cells PMA-I stimulated	--
50	chr4:152662400-152671000	Weak transcription	Liver	Liver

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