Variant report

Variant	rs60323168
Chromosome Location	chr4:152578216-152578217
allele	A/C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs17027671	1.00[AMR][1000 genomes]
rs17027827	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17027832	1.00[AMR][1000 genomes]
rs73862271	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2755535	chr4:152549395-152609395	Enhancers Weak transcription Genic enhancers Strong transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:54 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:152545600-152578600	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr4:152561000-152579400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr4:152563800-152625200	Weak transcription	Hela-S3	cervix
4	chr4:152564200-152595200	Weak transcription	Aorta	Aorta
5	chr4:152567400-152608600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
6	chr4:152567800-152609000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
7	chr4:152570600-152582200	Weak transcription	Spleen	Spleen
8	chr4:152570800-152579200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr4:152571200-152584200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr4:152571200-152584200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
11	chr4:152571600-152583600	Weak transcription	Ovary	ovary
12	chr4:152571600-152595000	Weak transcription	HepG2	liver
13	chr4:152572400-152578600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
14	chr4:152574200-152578600	Weak transcription	Right Ventricle	heart
15	chr4:152574400-152582800	Weak transcription	Pancreatic Islets	Pancreatic Islet
16	chr4:152574600-152579600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr4:152575000-152579000	Weak transcription	Fetal Muscle Leg	muscle
18	chr4:152575000-152580000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr4:152575000-152580200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr4:152575400-152582000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr4:152575600-152580600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr4:152575800-152580000	Weak transcription	Rectal Smooth Muscle	rectum
23	chr4:152576200-152579400	Weak transcription	Psoas Muscle	Psoas
24	chr4:152576400-152580000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr4:152576400-152580000	Weak transcription	NHDF-Ad	bronchial
26	chr4:152576800-152580400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
27	chr4:152577200-152578400	Strong transcription	Rectal Mucosa Donor 31	rectum
28	chr4:152577200-152579200	Strong transcription	Colonic Mucosa	Colon
29	chr4:152577200-152579600	Strong transcription	iPS DF 6.9 Cell Line	embryonic stem cell
30	chr4:152577200-152579800	Strong transcription	HUES64 Cell Line	embryonic stem cell
31	chr4:152577200-152579800	Strong transcription	Fetal Intestine Small	intestine
32	chr4:152577200-152580200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
33	chr4:152577200-152580800	Strong transcription	Rectal Mucosa Donor 29	rectum
34	chr4:152577200-152581000	Strong transcription	H1 Cell Line	embryonic stem cell
35	chr4:152577200-152581400	Strong transcription	H9 Cell Line	embryonic stem cell
36	chr4:152577200-152585000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
37	chr4:152577400-152579000	Strong transcription	Duodenum Mucosa	Duodenum
38	chr4:152577400-152579200	Strong transcription	Esophagus	oesophagus
39	chr4:152577400-152579400	Strong transcription	Skeletal Muscle Male	skeletal muscle
40	chr4:152577400-152579800	Strong transcription	iPS-18 Cell Line	embryonic stem cell
41	chr4:152577400-152580200	Strong transcription	Fetal Intestine Large	intestine
42	chr4:152577400-152580200	Strong transcription	HMEC	breast
43	chr4:152577400-152580400	Strong transcription	Pancreas	Pancrea
44	chr4:152577400-152580800	Strong transcription	HUES6 Cell Line	embryonic stem cell
45	chr4:152577400-152580800	Strong transcription	Sigmoid Colon	Sigmoid Colon
46	chr4:152577400-152581600	Strong transcription	HUES48 Cell Line	embryonic stem cell
47	chr4:152577800-152578400	Strong transcription	ES-I3 Cell Line	embryonic stem cell
48	chr4:152577800-152579200	Strong transcription	Liver	Liver
49	chr4:152578000-152578600	Strong transcription	Skeletal Muscle Female	skeletal muscle
50	chr4:152578000-152579600	Strong transcription	Gastric	stomach

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links