Variant report

Variant	rs17032332
Chromosome Location	chr4:103182661-103182662
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 120 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:108)

rs_ID	r²[population]
rs10433893	0.92[AMR][1000 genomes];0.84[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10433991	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10489122	0.90[JPT][hapmap]
rs11097768	0.92[ASN][1000 genomes]
rs11725311	0.87[ASN][1000 genomes]
rs11733504	0.87[ASN][1000 genomes]
rs11733720	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11736058	0.85[ASN][1000 genomes]
rs13111744	0.85[ASN][1000 genomes]
rs13111958	0.84[ASN][1000 genomes]
rs13111982	0.84[ASN][1000 genomes]
rs13112133	0.85[ASN][1000 genomes]
rs13114343	0.87[CHB][hapmap]
rs13126885	0.90[CHB][hapmap];0.86[JPT][hapmap];0.85[ASN][1000 genomes]
rs149268	0.85[ASN][1000 genomes]
rs151370	0.91[CHB][hapmap];0.85[ASN][1000 genomes]
rs151371	0.91[CHB][hapmap];0.85[JPT][hapmap]
rs151413	0.81[ASN][1000 genomes]
rs151414	0.82[ASN][1000 genomes]
rs151416	0.81[ASN][1000 genomes]
rs17032357	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17032400	0.81[JPT][hapmap]
rs182865	0.85[ASN][1000 genomes]
rs190178	0.87[CHB][hapmap];0.85[ASN][1000 genomes]
rs192068	0.85[ASN][1000 genomes]
rs1968543	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2119209	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2119210	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2119211	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2119213	0.90[CHB][hapmap];0.95[JPT][hapmap];0.85[ASN][1000 genomes]
rs2165265	0.82[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.87[ASN][1000 genomes]
rs34376460	0.85[ASN][1000 genomes]
rs34922141	0.84[ASN][1000 genomes]
rs35301460	0.84[ASN][1000 genomes]
rs35610681	0.85[ASN][1000 genomes]
rs35700174	0.84[ASN][1000 genomes]
rs366374	0.84[ASN][1000 genomes]
rs368845	0.85[ASN][1000 genomes]
rs373091	0.84[ASN][1000 genomes]
rs380768	0.85[ASN][1000 genomes]
rs384085	0.83[ASN][1000 genomes]
rs384460	0.81[ASN][1000 genomes]
rs386682	0.83[ASN][1000 genomes]
rs387839	0.85[ASN][1000 genomes]
rs394649	0.85[ASN][1000 genomes]
rs406749	0.85[ASN][1000 genomes]
rs406954	0.85[ASN][1000 genomes]
rs408364	0.85[ASN][1000 genomes]
rs413462	0.85[ASN][1000 genomes]
rs418348	0.85[ASN][1000 genomes]
rs420823	0.85[ASN][1000 genomes]
rs430589	0.85[ASN][1000 genomes]
rs431984	0.83[ASN][1000 genomes]
rs432186	0.82[ASN][1000 genomes]
rs438803	0.91[CHB][hapmap];0.82[JPT][hapmap];0.85[ASN][1000 genomes]
rs440507	0.82[ASN][1000 genomes]
rs444943	0.85[ASN][1000 genomes]
rs4476601	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs448181	0.85[ASN][1000 genomes]
rs451078	0.84[ASN][1000 genomes]
rs452385	0.85[ASN][1000 genomes]
rs4525979	0.85[ASN][1000 genomes]
rs455610	0.85[ASN][1000 genomes]
rs455741	0.85[ASN][1000 genomes]
rs456349	0.85[ASN][1000 genomes]
rs456521	0.84[ASN][1000 genomes]
rs456985	0.84[ASN][1000 genomes]
rs457490	0.85[ASN][1000 genomes]
rs457736	0.85[ASN][1000 genomes]
rs458201	0.85[ASN][1000 genomes]
rs458943	0.85[ASN][1000 genomes]
rs459159	0.85[ASN][1000 genomes]
rs459331	0.85[ASN][1000 genomes]
rs459559	0.83[ASN][1000 genomes]
rs460026	0.87[CHB][hapmap];0.85[ASN][1000 genomes]
rs460610	0.85[ASN][1000 genomes]
rs460755	0.85[ASN][1000 genomes]
rs461902	0.85[ASN][1000 genomes]
rs4621433	0.85[ASN][1000 genomes]
rs462186	0.85[ASN][1000 genomes]
rs463721	0.84[ASN][1000 genomes]
rs463772	0.85[ASN][1000 genomes]
rs4640675	0.85[ASN][1000 genomes]
rs465144	0.94[CHB][hapmap];0.82[JPT][hapmap];0.85[ASN][1000 genomes]
rs465176	0.84[ASN][1000 genomes]
rs467204	0.85[ASN][1000 genomes]
rs4698844	0.86[JPT][hapmap]
rs4698845	0.86[JPT][hapmap]
rs58321370	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs593576	0.85[ASN][1000 genomes]
rs62323488	0.82[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62323492	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62323541	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.84[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62327916	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs642663	0.81[ASN][1000 genomes]
rs643119	0.84[ASN][1000 genomes]
rs643645	0.85[ASN][1000 genomes]
rs657195	0.85[ASN][1000 genomes]
rs658953	0.85[ASN][1000 genomes]
rs659837	0.83[ASN][1000 genomes]
rs660502	0.85[ASN][1000 genomes]
rs660580	0.85[ASN][1000 genomes]
rs6825428	0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs682916	0.85[ASN][1000 genomes]
rs6852794	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6855701	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs688499	0.85[ASN][1000 genomes]
rs9995079	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869164	chr4:102483189-103213842	Weak transcription Enhancers Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv428447	chr4:103103730-103262107	Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv1008680	chr4:103153709-103206555	Strong transcription Weak transcription Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv1011868	chr4:103158581-103206555	Weak transcription Strong transcription Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv999012	chr4:103162076-103206555	Weak transcription Strong transcription ZNF genes & repeats Enhancers Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv1012254	chr4:103174196-103191787	Weak transcription Strong transcription Enhancers Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv1014733	chr4:103174196-103206240	Weak transcription Strong transcription ZNF genes & repeats Enhancers Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	nsv1002129	chr4:103174196-103206555	Weak transcription ZNF genes & repeats Enhancers Active TSS Strong transcription Bivalent Enhancer	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
9	nsv1013313	chr4:103175700-103206555	Enhancers Strong transcription Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
10	nsv1013439	chr4:103178743-103191787	Strong transcription Enhancers Weak transcription Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
11	nsv1003825	chr4:103179197-103206555	Strong transcription Weak transcription ZNF genes & repeats Enhancers Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
12	nsv998689	chr4:103179788-103206555	Enhancers Weak transcription Strong transcription ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:103179000-103184000	Weak transcription	HUES64 Cell Line	embryonic stem cell
2	chr4:103179200-103202200	Weak transcription	Lung	lung
3	chr4:103179400-103188800	Weak transcription	Rectal Mucosa Donor 29	rectum
4	chr4:103179400-103221000	Weak transcription	K562	blood
5	chr4:103180400-103200400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr4:103180600-103184400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr4:103181000-103183400	Weak transcription	Hela-S3	cervix
8	chr4:103181000-103185400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr4:103181000-103188200	Weak transcription	Rectal Mucosa Donor 31	rectum
10	chr4:103181400-103197600	Weak transcription	Primary hematopoietic stem cells	blood
11	chr4:103181600-103183200	Weak transcription	Dnd41	blood
12	chr4:103181600-103210800	Weak transcription	Liver	Liver
13	chr4:103181800-103230400	Weak transcription	Sigmoid Colon	Sigmoid Colon
14	chr4:103182000-103185000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
15	chr4:103182000-103255400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links