Variant report

Variant	rs11097768
Chromosome Location	chr4:103137712-103137713
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:103133046..103134601-chr4:103136019..103137875,2	K562	blood:

Extended variants
information (count: 36 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10433893	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10433991	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10489122	0.80[JPT][hapmap]
rs11733504	0.81[ASN][1000 genomes]
rs11733720	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13126885	0.86[CHB][hapmap]
rs1348024	0.87[ASN][1000 genomes]
rs151370	0.81[CHB][hapmap]
rs151371	0.81[CHB][hapmap];0.83[JPT][hapmap]
rs151413	0.83[ASN][1000 genomes]
rs151414	0.84[ASN][1000 genomes]
rs151416	0.86[ASN][1000 genomes]
rs151417	0.82[ASN][1000 genomes]
rs17032332	0.92[ASN][1000 genomes]
rs17032357	0.92[ASN][1000 genomes]
rs1968543	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2119209	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2119210	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2119211	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2119213	0.81[CHB][hapmap];0.85[JPT][hapmap]
rs2165265	0.85[CHB][hapmap];0.84[JPT][hapmap];0.81[ASN][1000 genomes]
rs438803	0.81[CHB][hapmap]
rs4476601	0.91[CHB][hapmap];0.90[JPT][hapmap];0.93[ASN][1000 genomes]
rs463721	0.81[ASN][1000 genomes]
rs465144	0.89[CHB][hapmap]
rs4698845	0.80[JPT][hapmap]
rs58321370	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62323488	0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62323492	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62323541	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62327916	0.92[ASN][1000 genomes]
rs6825428	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6852794	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6855701	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869164	chr4:102483189-103213842	Weak transcription Enhancers Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv428447	chr4:103103730-103262107	Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11097768	SLC39A8	cis	multi-tissue	Pritchard

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:103132400-103139200	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr4:103137200-103137800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
3	chr4:103137200-103139400	Enhancers	A549	lung
4	chr4:103137400-103137800	Enhancers	Hela-S3	cervix
5	chr4:103137400-103138200	Enhancers	HUES64 Cell Line	embryonic stem cell
6	chr4:103137600-103137800	Enhancers	ES-I3 Cell Line	embryonic stem cell
7	chr4:103137600-103138000	Enhancers	iPS-15b Cell Line	embryonic stem cell

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