Variant report

Variant	rs6825428
Chromosome Location	chr4:103141441-103141442
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 79 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:77)

rs_ID	r²[population]
rs10433893	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10433991	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11097768	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11725311	0.81[ASN][1000 genomes]
rs11733504	0.83[ASN][1000 genomes]
rs11733720	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11736058	0.81[ASN][1000 genomes]
rs13111744	0.81[ASN][1000 genomes]
rs13112133	0.81[ASN][1000 genomes]
rs13126885	0.81[ASN][1000 genomes]
rs1348024	0.81[ASN][1000 genomes]
rs149268	0.81[ASN][1000 genomes]
rs151370	0.81[ASN][1000 genomes]
rs151413	0.82[ASN][1000 genomes]
rs151414	0.83[ASN][1000 genomes]
rs151416	0.82[ASN][1000 genomes]
rs17032332	0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17032357	0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs182865	0.81[ASN][1000 genomes]
rs190178	0.81[ASN][1000 genomes]
rs192068	0.81[ASN][1000 genomes]
rs1968543	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2119209	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2119210	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2119211	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2119213	0.81[ASN][1000 genomes]
rs2165265	0.83[ASN][1000 genomes]
rs34376460	0.81[ASN][1000 genomes]
rs35610681	0.81[ASN][1000 genomes]
rs368845	0.81[ASN][1000 genomes]
rs380768	0.81[ASN][1000 genomes]
rs387839	0.81[ASN][1000 genomes]
rs406749	0.81[ASN][1000 genomes]
rs406954	0.81[ASN][1000 genomes]
rs408364	0.81[ASN][1000 genomes]
rs413462	0.81[ASN][1000 genomes]
rs418348	0.81[ASN][1000 genomes]
rs420823	0.81[ASN][1000 genomes]
rs430589	0.81[ASN][1000 genomes]
rs438803	0.81[ASN][1000 genomes]
rs444943	0.81[ASN][1000 genomes]
rs4476601	0.94[ASN][1000 genomes]
rs448181	0.81[ASN][1000 genomes]
rs452385	0.81[ASN][1000 genomes]
rs4525979	0.81[ASN][1000 genomes]
rs455610	0.81[ASN][1000 genomes]
rs456349	0.81[ASN][1000 genomes]
rs457490	0.81[ASN][1000 genomes]
rs457736	0.81[ASN][1000 genomes]
rs458201	0.81[ASN][1000 genomes]
rs458943	0.81[ASN][1000 genomes]
rs459159	0.81[ASN][1000 genomes]
rs459331	0.81[ASN][1000 genomes]
rs460610	0.81[ASN][1000 genomes]
rs460755	0.81[ASN][1000 genomes]
rs461902	0.81[ASN][1000 genomes]
rs4621433	0.81[ASN][1000 genomes]
rs462186	0.81[ASN][1000 genomes]
rs463772	0.81[ASN][1000 genomes]
rs4640675	0.81[ASN][1000 genomes]
rs465144	0.81[ASN][1000 genomes]
rs467204	0.81[ASN][1000 genomes]
rs58321370	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs593576	0.81[ASN][1000 genomes]
rs62323488	0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62323492	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62323541	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62327916	0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs643645	0.81[ASN][1000 genomes]
rs657195	0.81[ASN][1000 genomes]
rs658953	0.81[ASN][1000 genomes]
rs660502	0.81[ASN][1000 genomes]
rs660580	0.81[ASN][1000 genomes]
rs682916	0.81[ASN][1000 genomes]
rs6852794	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6855701	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs688499	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869164	chr4:102483189-103213842	Weak transcription Enhancers Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv428447	chr4:103103730-103262107	Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:103140400-103143600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr4:103140600-103143400	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr4:103140800-103141600	Enhancers	iPS-20b Cell Line	embryonic stem cell
4	chr4:103141400-103141600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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