Variant report

Variant	rs17033137
Chromosome Location	chr2:99149474-99149475
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:99140535..99142504-chr2:99146739..99149511,3	K562	blood:
2	chr2:99131738..99134767-chr2:99148666..99151301,3	K562	blood:

Extended variants
information (count: 34 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs11885661	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs11890366	1.00[EUR][1000 genomes]
rs11891148	1.00[EUR][1000 genomes]
rs11901761	1.00[EUR][1000 genomes]
rs13395005	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs17020532	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17030716	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs17034163	1.00[EUR][1000 genomes]
rs17034202	1.00[EUR][1000 genomes]
rs17034261	1.00[EUR][1000 genomes]
rs1847551	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2271041	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs2871214	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35028575	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6710669	1.00[EUR][1000 genomes]
rs6716095	1.00[EUR][1000 genomes]
rs6727604	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6730113	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6730953	1.00[EUR][1000 genomes]
rs6739018	1.00[EUR][1000 genomes]
rs6749575	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6749743	1.00[EUR][1000 genomes]
rs6754711	1.00[EUR][1000 genomes]
rs6756034	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6756693	1.00[EUR][1000 genomes]
rs7561785	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs7570509	1.00[EUR][1000 genomes]
rs7585045	1.00[EUR][1000 genomes]
rs7605114	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv518056	chr2:98586842-99156296	Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv1006328	chr2:98977192-99210376	Strong transcription Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv1013941	chr2:99116255-99317933	Weak transcription Strong transcription Genic enhancers Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
4	nsv535834	chr2:99116255-99317933	Weak transcription Enhancers ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
5	nsv2840	chr2:99116934-99162190	Weak transcription Flanking Active TSS Strong transcription Genic enhancers Enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs17033137	IL13RA1	trans	lymphoblastoid	seeQTL

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:99114400-99154000	Weak transcription	HepG2	liver
2	chr2:99121600-99155400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr2:99123200-99154400	Weak transcription	Rectal Mucosa Donor 31	rectum
4	chr2:99126200-99162000	Weak transcription	Small Intestine	intestine
5	chr2:99127000-99176800	Weak transcription	Right Atrium	heart
6	chr2:99131400-99154800	Weak transcription	Fetal Kidney	kidney
7	chr2:99131600-99150000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr2:99131800-99149800	Weak transcription	Skeletal Muscle Female	skeletal muscle
9	chr2:99131800-99152200	Weak transcription	HSMM	muscle
10	chr2:99131800-99154600	Weak transcription	NH-A	brain
11	chr2:99131800-99154600	Weak transcription	Osteobl	bone
12	chr2:99132400-99152400	Weak transcription	Brain Inferior Temporal Lobe	brain
13	chr2:99132400-99152400	Weak transcription	Placenta	Placenta
14	chr2:99132400-99153800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
15	chr2:99132400-99154000	Weak transcription	Brain Cingulate Gyrus	brain
16	chr2:99132600-99154200	Weak transcription	Brain Angular Gyrus	brain
17	chr2:99133000-99152200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr2:99133000-99176400	Weak transcription	Psoas Muscle	Psoas
19	chr2:99133200-99149800	Weak transcription	Brain Hippocampus Middle	brain
20	chr2:99134200-99152600	Weak transcription	NHDF-Ad	bronchial
21	chr2:99134200-99156600	Weak transcription	Muscle Satellite Cultured Cells	--
22	chr2:99134400-99154000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr2:99134400-99169400	Weak transcription	NHLF	lung
24	chr2:99135000-99150000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
25	chr2:99135400-99155600	Weak transcription	Placenta Amnion	Placenta Amnion
26	chr2:99135600-99152600	Weak transcription	Duodenum Smooth Muscle	Duodenum
27	chr2:99135600-99154000	Weak transcription	Esophagus	oesophagus
28	chr2:99135800-99152400	Weak transcription	Colon Smooth Muscle	Colon
29	chr2:99136000-99153600	Weak transcription	Rectal Smooth Muscle	rectum
30	chr2:99136000-99154600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr2:99136400-99185400	Weak transcription	Hela-S3	cervix
32	chr2:99136800-99152200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
33	chr2:99136800-99154200	Weak transcription	H9 Cell Line	embryonic stem cell
34	chr2:99137000-99153800	Weak transcription	Right Ventricle	heart
35	chr2:99137600-99153800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
36	chr2:99137600-99153800	Weak transcription	Gastric	stomach
37	chr2:99137800-99153600	Weak transcription	Brain Anterior Caudate	brain
38	chr2:99138000-99150000	Weak transcription	Skeletal Muscle Male	skeletal muscle
39	chr2:99138000-99152200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
40	chr2:99138000-99152400	Weak transcription	Liver	Liver
41	chr2:99138000-99152400	Weak transcription	Ovary	ovary
42	chr2:99138000-99153400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
43	chr2:99138000-99153600	Weak transcription	Spleen	Spleen
44	chr2:99138000-99153800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
45	chr2:99138000-99154000	Weak transcription	Colonic Mucosa	Colon
46	chr2:99138200-99149600	Weak transcription	Stomach Smooth Muscle	stomach
47	chr2:99138200-99149800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
48	chr2:99138200-99149800	Weak transcription	Adipose Nuclei	Adipose
49	chr2:99138200-99150600	Weak transcription	Sigmoid Colon	Sigmoid Colon
50	chr2:99138200-99151000	Weak transcription	HUES48 Cell Line	embryonic stem cell

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