Variant report

Variant	rs35028575
Chromosome Location	chr2:99155998-99155999
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:99151217..99153111-chr2:99155244..99157121,2	K562	blood:
2	chr2:99155790..99159181-chr2:99223448..99226329,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000115446	Chromatin interaction
ENSG00000183513	Chromatin interaction

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs11885661	1.00[EUR][1000 genomes]
rs11890366	1.00[EUR][1000 genomes]
rs11891148	1.00[EUR][1000 genomes]
rs11901761	1.00[EUR][1000 genomes]
rs13395005	1.00[EUR][1000 genomes]
rs17020532	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17030716	1.00[EUR][1000 genomes]
rs17033137	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17034163	1.00[EUR][1000 genomes]
rs17034202	1.00[EUR][1000 genomes]
rs17034261	1.00[EUR][1000 genomes]
rs1847551	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2271041	1.00[EUR][1000 genomes]
rs2871214	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6710669	1.00[EUR][1000 genomes]
rs6716095	1.00[EUR][1000 genomes]
rs6727604	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6730113	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6730953	1.00[EUR][1000 genomes]
rs6739018	1.00[EUR][1000 genomes]
rs6749575	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6749743	1.00[EUR][1000 genomes]
rs6754711	1.00[EUR][1000 genomes]
rs6756034	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6756693	1.00[EUR][1000 genomes]
rs7561785	1.00[EUR][1000 genomes]
rs7570509	1.00[EUR][1000 genomes]
rs7585045	1.00[EUR][1000 genomes]
rs7605114	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv518056	chr2:98586842-99156296	Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv1006328	chr2:98977192-99210376	Strong transcription Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv1013941	chr2:99116255-99317933	Weak transcription Strong transcription Genic enhancers Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
4	nsv535834	chr2:99116255-99317933	Weak transcription Enhancers ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
5	nsv2840	chr2:99116934-99162190	Weak transcription Flanking Active TSS Strong transcription Genic enhancers Enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:99126200-99162000	Weak transcription	Small Intestine	intestine
2	chr2:99127000-99176800	Weak transcription	Right Atrium	heart
3	chr2:99133000-99176400	Weak transcription	Psoas Muscle	Psoas
4	chr2:99134200-99156600	Weak transcription	Muscle Satellite Cultured Cells	--
5	chr2:99134400-99169400	Weak transcription	NHLF	lung
6	chr2:99136400-99185400	Weak transcription	Hela-S3	cervix
7	chr2:99139400-99163600	Weak transcription	K562	blood
8	chr2:99141200-99172200	Weak transcription	Stomach Mucosa	stomach
9	chr2:99146800-99163400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
10	chr2:99147200-99200200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr2:99148200-99162600	Strong transcription	Primary T cells fromperipheralblood	blood
12	chr2:99148400-99158000	Strong transcription	GM12878-XiMat	blood
13	chr2:99148400-99163400	Strong transcription	Primary T helper cells fromperipheralblood	blood
14	chr2:99148400-99211200	Strong transcription	Monocytes-CD14+_RO01746	blood
15	chr2:99149000-99163200	Strong transcription	Primary T cells from cord blood	blood
16	chr2:99149000-99163200	Strong transcription	Dnd41	blood
17	chr2:99149000-99163600	Strong transcription	Thymus	Thymus
18	chr2:99149000-99209800	Strong transcription	Primary monocytes fromperipheralblood	blood
19	chr2:99149000-99210800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
20	chr2:99149200-99210800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
21	chr2:99149400-99157400	Strong transcription	Primary T helper cells PMA-I stimulated	--
22	chr2:99149400-99158200	Strong transcription	Fetal Thymus	thymus
23	chr2:99149400-99162000	Weak transcription	Pancreatic Islets	Pancreatic Islet
24	chr2:99149400-99163200	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
25	chr2:99149400-99166800	Strong transcription	Aorta	Aorta
26	chr2:99149600-99176200	Strong transcription	Fetal Stomach	stomach
27	chr2:99149800-99157400	Strong transcription	Brain Hippocampus Middle	brain
28	chr2:99149800-99158600	Strong transcription	Primary T killer naive cells fromperipheralblood	blood
29	chr2:99150000-99163200	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
30	chr2:99150800-99169200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
31	chr2:99151000-99159800	Weak transcription	Primary hematopoietic stem cells	blood
32	chr2:99151000-99165400	Strong transcription	HUES48 Cell Line	embryonic stem cell
33	chr2:99151600-99156200	Weak transcription	NHEK	skin
34	chr2:99151800-99158600	Strong transcription	Primary T helper naive cells from peripheral blood	blood
35	chr2:99151800-99158800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
36	chr2:99151800-99164400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
37	chr2:99152000-99157400	Strong transcription	Fetal Muscle Trunk	muscle
38	chr2:99152200-99156200	Strong transcription	Primary B cells from peripheral blood	blood
39	chr2:99152200-99156800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
40	chr2:99152200-99157200	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
41	chr2:99152200-99157400	Strong transcription	Primary T helper memory cells from peripheral blood 1	blood
42	chr2:99152200-99157400	Strong transcription	Adipose Nuclei	Adipose
43	chr2:99152200-99158800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
44	chr2:99152200-99162800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
45	chr2:99152200-99163600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
46	chr2:99152200-99166000	Strong transcription	iPS-18 Cell Line	embryonic stem cell
47	chr2:99152200-99167200	Strong transcription	Brain Germinal Matrix	brain
48	chr2:99152200-99170600	Strong transcription	Skeletal Muscle Male	skeletal muscle
49	chr2:99152200-99171000	Strong transcription	Left Ventricle	heart
50	chr2:99152200-99174600	Strong transcription	Stomach Smooth Muscle	stomach

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