Variant report
| Variant | rs1847551 |
|---|---|
| Chromosome Location | chr2:99052427-99052428 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:28)
| rs_ID | r2[population] |
|---|---|
| rs11885661 | 1.00[EUR][1000 genomes] |
| rs11890366 | 1.00[EUR][1000 genomes] |
| rs11901761 | 1.00[EUR][1000 genomes] |
| rs13395005 | 1.00[EUR][1000 genomes] |
| rs17020532 | 0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs17030716 | 1.00[EUR][1000 genomes] |
| rs17033137 | 0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs17034163 | 1.00[EUR][1000 genomes] |
| rs17034202 | 1.00[EUR][1000 genomes] |
| rs17034261 | 1.00[EUR][1000 genomes] |
| rs2271041 | 1.00[EUR][1000 genomes] |
| rs2871214 | 0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs35028575 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs6710669 | 1.00[EUR][1000 genomes] |
| rs6716095 | 1.00[EUR][1000 genomes] |
| rs6727604 | 0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs6730113 | 0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs6730953 | 1.00[EUR][1000 genomes] |
| rs6739018 | 1.00[EUR][1000 genomes] |
| rs6749575 | 0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs6749743 | 1.00[EUR][1000 genomes] |
| rs6754711 | 1.00[EUR][1000 genomes] |
| rs6756034 | 0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs6756693 | 1.00[EUR][1000 genomes] |
| rs7561785 | 1.00[EUR][1000 genomes] |
| rs7570509 | 1.00[EUR][1000 genomes] |
| rs7585045 | 1.00[EUR][1000 genomes] |
| rs7605114 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv518056 | chr2:98586842-99156296 | Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 16 gene(s) | inside rSNPs | diseases |
| 2 | nsv1006328 | chr2:98977192-99210376 | Strong transcription Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
| 3 | esv3342562 | chr2:99046154-99053711 | ZNF genes & repeats Enhancers Weak transcription Bivalent Enhancer | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr2:99051600-99058600 | Weak transcription | ES-UCSF4 Cell Line | embryonic stem cell |
| 2 | chr2:99051800-99053800 | Enhancers | A549 | lung |
