Variant report

Variant	rs170344
Chromosome Location	chr6:143830031-143830032
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:143829496..143838775-chr6:143854591..143861568,17	MCF-7	breast:
2	chr6:143770206..143773921-chr6:143828795..143834716,12	K562	blood:
3	chr6:143827995..143830222-chr6:144165832..144168637,2	K562	blood:
4	chr6:143828004..143830607-chr6:143830758..143832524,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000112419	Chromatin interaction
ENSG00000034693	Chromatin interaction
ENSG00000223203	Chromatin interaction
ENSG00000189007	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs161057	0.80[CEU][hapmap]
rs161060	0.80[CEU][hapmap]
rs161071	0.80[CEU][hapmap]
rs161073	0.80[CEU][hapmap]
rs223235	0.80[CEU][hapmap]
rs3804543	0.80[CEU][hapmap]
rs573119	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs603714	0.80[CEU][hapmap]
rs656935	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9321916	0.90[CEU][hapmap];0.81[JPT][hapmap];0.88[EUR][1000 genomes]

No data

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:143772600-143832000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr6:143773400-143832000	Weak transcription	Fetal Brain Male	brain
3	chr6:143781000-143832000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr6:143790200-143831600	Weak transcription	Esophagus	oesophagus
5	chr6:143790200-143831600	Weak transcription	Gastric	stomach
6	chr6:143795800-143831800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
7	chr6:143797600-143831000	Weak transcription	Skeletal Muscle Male	skeletal muscle
8	chr6:143800800-143831000	Weak transcription	Colon Smooth Muscle	Colon
9	chr6:143811400-143832000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr6:143812200-143831600	Weak transcription	Right Ventricle	heart
11	chr6:143812400-143832200	Weak transcription	Spleen	Spleen
12	chr6:143812600-143831800	Weak transcription	NHEK	skin
13	chr6:143812600-143832000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr6:143814400-143830200	Strong transcription	Primary monocytes fromperipheralblood	blood
15	chr6:143814600-143831000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr6:143814800-143831400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr6:143815200-143830200	Weak transcription	Pancreatic Islets	Pancreatic Islet
18	chr6:143815200-143830800	Strong transcription	Placenta	Placenta
19	chr6:143815600-143831800	Weak transcription	Brain Inferior Temporal Lobe	brain
20	chr6:143815800-143830200	Weak transcription	Hela-S3	cervix
21	chr6:143815800-143832200	Weak transcription	Small Intestine	intestine
22	chr6:143817000-143830400	Weak transcription	Stomach Mucosa	stomach
23	chr6:143817400-143831000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
24	chr6:143817800-143832200	Weak transcription	Placenta Amnion	Placenta Amnion
25	chr6:143819000-143831800	Weak transcription	Brain Angular Gyrus	brain
26	chr6:143819200-143832000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
27	chr6:143819800-143831800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
28	chr6:143820000-143831000	Weak transcription	Primary T helper cells fromperipheralblood	blood
29	chr6:143820000-143831800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
30	chr6:143820000-143832000	Weak transcription	Thymus	Thymus
31	chr6:143820200-143830600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
32	chr6:143820200-143831600	Weak transcription	Primary T helper cells PMA-I stimulated	--
33	chr6:143820200-143831800	Weak transcription	Primary T cells from cord blood	blood
34	chr6:143820200-143831800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
35	chr6:143820400-143832000	Weak transcription	Fetal Thymus	thymus
36	chr6:143821200-143831200	Weak transcription	A549	lung
37	chr6:143821400-143831800	Weak transcription	Fetal Kidney	kidney
38	chr6:143821600-143831600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
39	chr6:143821800-143831200	Weak transcription	Brain Anterior Caudate	brain
40	chr6:143821800-143831800	Weak transcription	NH-A	brain
41	chr6:143821800-143832000	Weak transcription	Primary B cells from cord blood	blood
42	chr6:143822000-143831800	Weak transcription	Psoas Muscle	Psoas
43	chr6:143822200-143831600	Weak transcription	Fetal Brain Female	brain
44	chr6:143825400-143832000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
45	chr6:143825800-143830600	Weak transcription	NHDF-Ad	bronchial
46	chr6:143827000-143831800	Weak transcription	Fetal Stomach	stomach
47	chr6:143827000-143832000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
48	chr6:143827400-143831800	Weak transcription	Brain Hippocampus Middle	brain
49	chr6:143827600-143832000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
50	chr6:143827800-143830200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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