Variant report

Variant	rs656935
Chromosome Location	chr6:143834028-143834029
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:1)
CpG islands
(count:0)
Chromatin interactive
region (count:12)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:1 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr6:143833544-143834279	HepG2	liver:	n/a	n/a

No data

(count:12 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:143833776..143837281-chr6:143848797..143850662,3	MCF-7	breast:
2	chr6:143833643..143836159-chr6:143840227..143841871,2	MCF-7	breast:
3	chr6:143829496..143838775-chr6:143854591..143861568,17	MCF-7	breast:
4	chr6:143833086..143836035-chr6:144328243..144329863,2	MCF-7	breast:
5	chr6:143833885..143836772-chr6:144163950..144165964,2	MCF-7	breast:
6	chr6:143769666..143773987-chr6:143831101..143834872,5	MCF-7	breast:
7	chr6:143770206..143773921-chr6:143828795..143834716,12	K562	blood:
8	chr6:143832949..143834464-chr6:144384295..144386790,2	K562	blood:
9	chr22:17847644..17848168-chr6:143833969..143834861,2	HCT-116	colon:
10	chr6:143381314..143382842-chr6:143831327..143834058,3	K562	blood:
11	chr6:143770206..143776731-chr6:143830754..143834661,9	K562	blood:
12	chr6:143832151..143834228-chr6:144285681..144288374,2	MCF-7	breast:

No data

Variant related genes	Relation type
FUCA2	TF binding region
ENSG00000223203	Chromatin interaction
ENSG00000112419	Chromatin interaction
ENSG00000189007	Chromatin interaction
ENSG00000118495	Chromatin interaction
ENSG00000034693	Chromatin interaction
ENSG00000146416	Chromatin interaction
ENSG00000135521	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs170344	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs573119	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9321916	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]

No data

Chromatin state (count:76 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:143832800-143834400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr6:143833200-143834200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
3	chr6:143833200-143835800	Weak transcription	Gastric	stomach
4	chr6:143833200-143836000	Weak transcription	Ovary	ovary
5	chr6:143833200-143836000	Weak transcription	Small Intestine	intestine
6	chr6:143833200-143836200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr6:143833200-143836200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr6:143833200-143836200	Weak transcription	Brain Germinal Matrix	brain
9	chr6:143833200-143838200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr6:143833200-143849600	Weak transcription	Primary T cells from cord blood	blood
11	chr6:143833400-143834400	Weak transcription	HUES48 Cell Line	embryonic stem cell
12	chr6:143833400-143834400	Weak transcription	HUES6 Cell Line	embryonic stem cell
13	chr6:143833400-143834400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
14	chr6:143833400-143834400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
15	chr6:143833400-143834400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
16	chr6:143833400-143834400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
17	chr6:143833400-143834400	Weak transcription	Stomach Mucosa	stomach
18	chr6:143833400-143834600	Enhancers	Duodenum Mucosa	Duodenum
19	chr6:143833400-143834600	Enhancers	GM12878-XiMat	blood
20	chr6:143833400-143834600	Enhancers	HepG2	liver
21	chr6:143833400-143835000	Enhancers	H1 Cell Line	embryonic stem cell
22	chr6:143833400-143835000	Enhancers	Primary T cells fromperipheralblood	blood
23	chr6:143833400-143835000	Enhancers	Fetal Intestine Large	intestine
24	chr6:143833400-143835200	Weak transcription	Skeletal Muscle Female	skeletal muscle
25	chr6:143833400-143835800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr6:143833400-143835800	Weak transcription	Brain Inferior Temporal Lobe	brain
27	chr6:143833400-143835800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
28	chr6:143833400-143835800	Weak transcription	Colon Smooth Muscle	Colon
29	chr6:143833400-143835800	Weak transcription	Fetal Lung	lung
30	chr6:143833400-143835800	Weak transcription	Stomach Smooth Muscle	stomach
31	chr6:143833400-143836000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
32	chr6:143833400-143836000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
33	chr6:143833400-143836000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
34	chr6:143833400-143836000	Weak transcription	Adipose Nuclei	Adipose
35	chr6:143833400-143836000	Weak transcription	Fetal Brain Female	brain
36	chr6:143833400-143836000	Weak transcription	Fetal Muscle Trunk	muscle
37	chr6:143833400-143836000	Weak transcription	Fetal Stomach	stomach
38	chr6:143833400-143836000	Weak transcription	Pancreas	Pancrea
39	chr6:143833400-143836000	Weak transcription	Psoas Muscle	Psoas
40	chr6:143833400-143836000	Weak transcription	Right Ventricle	heart
41	chr6:143833400-143836000	Weak transcription	NHDF-Ad	bronchial
42	chr6:143833400-143836000	Weak transcription	NHLF	lung
43	chr6:143833400-143836200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
44	chr6:143833400-143836200	Weak transcription	Brain Anterior Caudate	brain
45	chr6:143833400-143836200	Weak transcription	Duodenum Smooth Muscle	Duodenum
46	chr6:143833400-143836200	Weak transcription	Rectal Smooth Muscle	rectum
47	chr6:143833400-143836200	Weak transcription	Right Atrium	heart
48	chr6:143833400-143836200	Weak transcription	Spleen	Spleen
49	chr6:143833400-143836200	Weak transcription	Osteobl	bone
50	chr6:143833400-143836600	Weak transcription	Brain Substantia Nigra	brain

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