Variant report

Variant	rs17040395
Chromosome Location	chr4:110318688-110318689
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs11932787	1.00[EUR][1000 genomes]
rs11936024	1.00[EUR][1000 genomes]
rs11936922	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11938121	1.00[EUR][1000 genomes]
rs11943569	1.00[EUR][1000 genomes]
rs11946147	1.00[EUR][1000 genomes]
rs17040401	1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17040524	0.83[EUR][1000 genomes]
rs34839272	1.00[EUR][1000 genomes]
rs56137934	1.00[EUR][1000 genomes]
rs56717127	1.00[EUR][1000 genomes]
rs56761640	0.83[EUR][1000 genomes]
rs57334274	1.00[EUR][1000 genomes]
rs58850082	1.00[EUR][1000 genomes]
rs59069711	1.00[EUR][1000 genomes]
rs6841710	1.00[EUR][1000 genomes]
rs6845967	1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73838811	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv461613	chr4:109922064-110593460	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
2	nsv595129	chr4:109922064-110593460	Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
3	esv1799708	chr4:110309234-110333106	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:110310800-110318800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr4:110311200-110327800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr4:110311600-110331400	Weak transcription	HSMMtube	muscle
4	chr4:110317200-110318800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr4:110317200-110321800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr4:110317400-110318800	Weak transcription	HUES6 Cell Line	embryonic stem cell
7	chr4:110317400-110319000	Weak transcription	iPS-18 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links