Variant report

Variant	rs6845967
Chromosome Location	chr4:110332917-110332918
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:110331995..110333806-chr4:110335263..110337273,2	K562	blood:

Variant related genes	Relation type
ENSG00000247950	Chromatin interaction

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs11932787	1.00[EUR][1000 genomes]
rs11936024	1.00[EUR][1000 genomes]
rs11936922	1.00[EUR][1000 genomes]
rs11938121	1.00[EUR][1000 genomes]
rs11943569	1.00[EUR][1000 genomes]
rs11946147	1.00[EUR][1000 genomes]
rs17040395	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17040401	1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17040524	0.83[EUR][1000 genomes]
rs34839272	1.00[EUR][1000 genomes]
rs56137934	1.00[EUR][1000 genomes]
rs56717127	1.00[EUR][1000 genomes]
rs56761640	0.83[EUR][1000 genomes]
rs57334274	1.00[EUR][1000 genomes]
rs58850082	1.00[EUR][1000 genomes]
rs59069711	1.00[EUR][1000 genomes]
rs6841710	1.00[EUR][1000 genomes]
rs73838811	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv461613	chr4:109922064-110593460	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
2	nsv595129	chr4:109922064-110593460	Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
3	esv1799708	chr4:110309234-110333106	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:110328800-110353600	Weak transcription	Brain Germinal Matrix	brain
2	chr4:110329800-110333400	Enhancers	ES-I3 Cell Line	embryonic stem cell
3	chr4:110329800-110334400	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chr4:110330200-110334000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr4:110330400-110339600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr4:110330600-110333600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr4:110330800-110333400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr4:110330800-110335800	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr4:110331600-110333800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr4:110332000-110333000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr4:110332000-110334400	Enhancers	HSMMtube	muscle
12	chr4:110332200-110333200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr4:110332200-110333400	Weak transcription	HSMM	muscle
14	chr4:110332200-110335400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr4:110332400-110333800	Enhancers	Fetal Muscle Leg	muscle
16	chr4:110332400-110335600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
17	chr4:110332400-110340400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr4:110332600-110333200	Weak transcription	HUES64 Cell Line	embryonic stem cell
19	chr4:110332600-110333400	Weak transcription	HUES6 Cell Line	embryonic stem cell
20	chr4:110332600-110333800	Enhancers	Cortex derived primary cultured neurospheres	brain
21	chr4:110332600-110335200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
22	chr4:110332800-110333000	Weak transcription	Fetal Stomach	stomach
23	chr4:110332800-110334200	Enhancers	Fetal Heart	heart
24	chr4:110332800-110336000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell

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