Variant report

Variant	rs58850082
Chromosome Location	chr4:110344857-110344858
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:110343609..110345169-chr4:110353025..110355277,2	K562	blood:
2	chr4:110344454..110346906-chr4:110479620..110481792,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000138802	Chromatin interaction
ENSG00000247950	Chromatin interaction
ENSG00000005059	Chromatin interaction

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs11932787	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11933904	1.00[AMR][1000 genomes]
rs11936024	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11936922	1.00[EUR][1000 genomes]
rs11938121	1.00[EUR][1000 genomes]
rs11943569	1.00[EUR][1000 genomes]
rs11946147	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17040395	1.00[EUR][1000 genomes]
rs17040401	1.00[EUR][1000 genomes]
rs17040524	0.83[EUR][1000 genomes]
rs34839272	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56137934	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56717127	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56761640	0.83[EUR][1000 genomes]
rs57334274	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59069711	1.00[EUR][1000 genomes]
rs6841710	1.00[EUR][1000 genomes]
rs6845967	1.00[EUR][1000 genomes]
rs73838811	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv461613	chr4:109922064-110593460	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
2	nsv595129	chr4:109922064-110593460	Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
3	esv1793428	chr4:110340134-110355591	Active TSS Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:110328800-110353600	Weak transcription	Brain Germinal Matrix	brain
2	chr4:110333200-110352800	Weak transcription	Fetal Intestine Small	intestine
3	chr4:110333400-110345400	Weak transcription	Fetal Stomach	stomach
4	chr4:110333800-110353400	Weak transcription	HSMM	muscle
5	chr4:110334400-110351600	Weak transcription	Fetal Muscle Leg	muscle
6	chr4:110341400-110350000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr4:110341600-110353200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr4:110341800-110345200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr4:110342200-110353600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
10	chr4:110343600-110345800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr4:110343600-110350800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr4:110343800-110351800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr4:110343800-110353400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr4:110343800-110353600	Weak transcription	HUES64 Cell Line	embryonic stem cell
15	chr4:110344000-110345200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
16	chr4:110344000-110345400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr4:110344000-110345400	Weak transcription	H9 Cell Line	embryonic stem cell
18	chr4:110344000-110349000	Weak transcription	Stomach Smooth Muscle	stomach
19	chr4:110344000-110350600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr4:110344000-110350800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr4:110344000-110351000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr4:110344000-110351400	Weak transcription	Fetal Muscle Trunk	muscle
23	chr4:110344000-110353000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
24	chr4:110344000-110353200	Weak transcription	HUES48 Cell Line	embryonic stem cell
25	chr4:110344000-110353200	Weak transcription	Primary T helper cells PMA-I stimulated	--
26	chr4:110344000-110353200	Weak transcription	Fetal Kidney	kidney
27	chr4:110344000-110353400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
28	chr4:110344000-110353400	Weak transcription	Liver	Liver
29	chr4:110344000-110353400	Weak transcription	Brain Inferior Temporal Lobe	brain
30	chr4:110344000-110353400	Weak transcription	Osteobl	bone
31	chr4:110344000-110353600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
32	chr4:110344000-110353600	Weak transcription	Primary T helper cells fromperipheralblood	blood
33	chr4:110344000-110353600	Weak transcription	Fetal Thymus	thymus
34	chr4:110344000-110353600	Weak transcription	NHDF-Ad	bronchial
35	chr4:110344000-110353800	Weak transcription	HUES6 Cell Line	embryonic stem cell
36	chr4:110344000-110353800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
37	chr4:110344000-110353800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
38	chr4:110344000-110353800	Weak transcription	Monocytes-CD14+_RO01746	blood
39	chr4:110344200-110353400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
40	chr4:110344200-110353600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood

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