Variant report

Variant	rs17041694
Chromosome Location	chr2:21201350-21201351
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10495715	0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12713558	0.90[YRI][hapmap]
rs12720847	0.90[YRI][hapmap]
rs17041644	0.82[AFR][1000 genomes]
rs17041647	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs17041656	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17041676	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs17041688	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4665645	0.86[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs73918013	0.82[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs7558478	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:21199200-21201400	Enhancers	Fetal Muscle Leg	muscle
2	chr2:21199200-21201600	Enhancers	Adipose Nuclei	Adipose
3	chr2:21199400-21201400	Enhancers	Fetal Stomach	stomach
4	chr2:21200000-21206400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr2:21200200-21204400	Weak transcription	Spleen	Spleen
6	chr2:21200200-21207000	Weak transcription	Skeletal Muscle Female	skeletal muscle
7	chr2:21200600-21201600	Enhancers	Fetal Kidney	kidney
8	chr2:21201000-21204400	Weak transcription	Stomach Smooth Muscle	stomach
9	chr2:21201200-21206400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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