Variant report

Variant	rs17043092
Chromosome Location	chr3:17134599-17134600
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr20:52468474..52471005-chr3:17134540..17137301,2	MCF-7	breast:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs17043079	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs34797423	0.88[MEX][hapmap];0.80[AMR][1000 genomes]
rs35216408	0.88[ASN][1000 genomes]
rs3924135	0.80[AMR][1000 genomes]
rs3924136	0.88[MEX][hapmap];0.80[AMR][1000 genomes]
rs3924137	0.88[MEX][hapmap];0.80[AMR][1000 genomes]

No data

Chromatin state (count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:17089400-17135000	Weak transcription	Pancreas	Pancrea
2	chr3:17112200-17137400	Weak transcription	Brain Germinal Matrix	brain
3	chr3:17112600-17135800	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr3:17112800-17135200	Weak transcription	Fetal Brain Male	brain
5	chr3:17120400-17135000	Weak transcription	HUVEC	blood vessel
6	chr3:17122800-17136000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr3:17127200-17136000	Weak transcription	Fetal Intestine Small	intestine
8	chr3:17129000-17134600	Enhancers	Psoas Muscle	Psoas
9	chr3:17129000-17141400	Weak transcription	Fetal Brain Female	brain
10	chr3:17129600-17134600	Strong transcription	Primary neutrophils fromperipheralblood	blood
11	chr3:17130000-17135800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr3:17130200-17134600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
13	chr3:17130400-17143400	Weak transcription	Thymus	Thymus
14	chr3:17130600-17135400	Weak transcription	Fetal Thymus	thymus
15	chr3:17130800-17135000	Weak transcription	Ovary	ovary
16	chr3:17130800-17136000	Weak transcription	Fetal Muscle Trunk	muscle
17	chr3:17130800-17136000	Weak transcription	Right Ventricle	heart
18	chr3:17130800-17137000	Enhancers	Skeletal Muscle Male	skeletal muscle
19	chr3:17131200-17135400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
20	chr3:17131200-17143800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
21	chr3:17131400-17134600	Strong transcription	Primary T cells fromperipheralblood	blood
22	chr3:17131600-17136200	Weak transcription	Brain Hippocampus Middle	brain
23	chr3:17131800-17134800	Enhancers	iPS-18 Cell Line	embryonic stem cell
24	chr3:17132000-17135000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
25	chr3:17132000-17135000	Strong transcription	Left Ventricle	heart
26	chr3:17132000-17136000	Weak transcription	Right Atrium	heart
27	chr3:17132400-17134600	Enhancers	Skeletal Muscle Female	skeletal muscle
28	chr3:17132400-17135600	Weak transcription	HUES6 Cell Line	embryonic stem cell
29	chr3:17132400-17135800	Weak transcription	Fetal Heart	heart
30	chr3:17132800-17134600	Weak transcription	Primary T helper cells PMA-I stimulated	--
31	chr3:17132800-17134600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
32	chr3:17132800-17135000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
33	chr3:17133000-17134600	Weak transcription	Primary hematopoietic stem cells	blood
34	chr3:17133000-17134600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
35	chr3:17133000-17134600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
36	chr3:17133000-17134600	Weak transcription	Pancreatic Islets	Pancreatic Islet
37	chr3:17133000-17134800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
38	chr3:17133000-17135600	Weak transcription	H9 Cell Line	embryonic stem cell
39	chr3:17133000-17136200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
40	chr3:17133000-17137000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
41	chr3:17133200-17134600	Enhancers	Hela-S3	cervix
42	chr3:17133600-17135600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
43	chr3:17133600-17142600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
44	chr3:17133800-17135600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
45	chr3:17133800-17137400	Weak transcription	Primary B cells from cord blood	blood
46	chr3:17133800-17137400	Weak transcription	Primary T cells from cord blood	blood
47	chr3:17134000-17134600	Enhancers	Fetal Muscle Leg	muscle
48	chr3:17134000-17135800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
49	chr3:17134000-17136200	Weak transcription	Sigmoid Colon	Sigmoid Colon
50	chr3:17134000-17142600	Weak transcription	Primary T helper cells fromperipheralblood	blood

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