Variant report

Variant	rs34797423
Chromosome Location	chr3:17028227-17028228
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11128817	0.85[ASN][1000 genomes]
rs1372073	0.92[ASN][1000 genomes]
rs17043036	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17043079	1.00[CHB][hapmap];0.88[MEX][hapmap];1.00[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs17043092	0.80[AMR][1000 genomes]
rs3924135	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3924136	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3924137	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73153213	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7619669	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:17014800-17033600	Weak transcription	Primary T cells from cord blood	blood
2	chr3:17014800-17038800	Weak transcription	Primary B cells from cord blood	blood
3	chr3:17016400-17032200	Weak transcription	Primary B cells from peripheral blood	blood
4	chr3:17017000-17028600	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr3:17017000-17029800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
6	chr3:17019000-17029800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
7	chr3:17020400-17034000	Weak transcription	Small Intestine	intestine
8	chr3:17020600-17028400	Weak transcription	Liver	Liver
9	chr3:17024000-17029600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
10	chr3:17024200-17034200	Weak transcription	Primary monocytes fromperipheralblood	blood
11	chr3:17024800-17028600	Weak transcription	Skeletal Muscle Female	skeletal muscle
12	chr3:17024800-17033400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr3:17025400-17033800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr3:17026800-17041200	Enhancers	Primary T helper cells PMA-I stimulated	--
15	chr3:17027200-17029200	Enhancers	Skeletal Muscle Male	skeletal muscle
16	chr3:17027200-17033800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
17	chr3:17027200-17033800	Weak transcription	Fetal Heart	heart
18	chr3:17027200-17035400	Weak transcription	Fetal Brain Female	brain
19	chr3:17027400-17029000	Enhancers	Left Ventricle	heart
20	chr3:17027400-17032800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
21	chr3:17027600-17028800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
22	chr3:17027600-17029200	Weak transcription	Pancreatic Islets	Pancreatic Islet
23	chr3:17027600-17029800	Weak transcription	Primary T helper cells fromperipheralblood	blood
24	chr3:17027600-17032400	Weak transcription	Right Ventricle	heart
25	chr3:17027600-17033800	Weak transcription	Gastric	stomach
26	chr3:17027600-17034000	Weak transcription	Right Atrium	heart
27	chr3:17027800-17034400	Weak transcription	Ovary	ovary
28	chr3:17028000-17028400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
29	chr3:17028000-17031800	Weak transcription	Primary T cells fromperipheralblood	blood
30	chr3:17028200-17028600	Weak transcription	Pancreas	Pancrea
31	chr3:17028200-17028600	Weak transcription	Psoas Muscle	Psoas
32	chr3:17028200-17028800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
33	chr3:17028200-17029000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
34	chr3:17028200-17029000	Enhancers	Spleen	Spleen

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