Variant report

Variant	rs17043036
Chromosome Location	chr3:17085315-17085316
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11128817	0.82[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs1372073	0.92[ASN][1000 genomes]
rs17043079	1.00[CHB][hapmap];1.00[AFR][1000 genomes]
rs34797423	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3924135	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3924136	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3924137	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73153213	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7619669	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:77 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:17053800-17086800	Weak transcription	Fetal Stomach	stomach
2	chr3:17055400-17088800	Weak transcription	Thymus	Thymus
3	chr3:17055800-17087800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr3:17060000-17088600	Weak transcription	Pancreas	Pancrea
5	chr3:17069400-17085600	Weak transcription	Aorta	Aorta
6	chr3:17070000-17093600	Weak transcription	Fetal Lung	lung
7	chr3:17072800-17085600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
8	chr3:17073000-17088800	Weak transcription	Right Atrium	heart
9	chr3:17073000-17093000	Weak transcription	Spleen	Spleen
10	chr3:17073200-17085400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
11	chr3:17076400-17085600	Weak transcription	Rectal Mucosa Donor 29	rectum
12	chr3:17076600-17086800	Weak transcription	Dnd41	blood
13	chr3:17077000-17086800	Weak transcription	Fetal Thymus	thymus
14	chr3:17077400-17085600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
15	chr3:17077400-17094600	Weak transcription	Psoas Muscle	Psoas
16	chr3:17077800-17086800	Weak transcription	Ovary	ovary
17	chr3:17079800-17090000	Strong transcription	Primary B cells from cord blood	blood
18	chr3:17080800-17090200	Weak transcription	Fetal Muscle Leg	muscle
19	chr3:17081000-17085600	Weak transcription	Esophagus	oesophagus
20	chr3:17081000-17085600	Weak transcription	Gastric	stomach
21	chr3:17081000-17088800	Weak transcription	Lung	lung
22	chr3:17081200-17087200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
23	chr3:17081200-17111400	Weak transcription	Placenta Amnion	Placenta Amnion
24	chr3:17081400-17085400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
25	chr3:17081400-17085400	Weak transcription	Adipose Nuclei	Adipose
26	chr3:17081400-17087400	Weak transcription	HUES64 Cell Line	embryonic stem cell
27	chr3:17081600-17087200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
28	chr3:17081600-17090000	Strong transcription	Primary T cells from cord blood	blood
29	chr3:17081600-17090200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
30	chr3:17081800-17090000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
31	chr3:17082200-17085600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
32	chr3:17082200-17086800	Weak transcription	Small Intestine	intestine
33	chr3:17082200-17087200	Weak transcription	Colonic Mucosa	Colon
34	chr3:17082200-17089800	Weak transcription	Duodenum Smooth Muscle	Duodenum
35	chr3:17082400-17085600	Weak transcription	Right Ventricle	heart
36	chr3:17082400-17085800	Weak transcription	Pancreatic Islets	Pancreatic Islet
37	chr3:17082400-17090200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
38	chr3:17082400-17092800	Weak transcription	Skeletal Muscle Male	skeletal muscle
39	chr3:17082600-17085600	Weak transcription	Brain Inferior Temporal Lobe	brain
40	chr3:17082600-17085600	Weak transcription	Skeletal Muscle Female	skeletal muscle
41	chr3:17082600-17085800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
42	chr3:17082600-17087000	Weak transcription	Fetal Intestine Small	intestine
43	chr3:17082600-17089400	Weak transcription	Rectal Mucosa Donor 31	rectum
44	chr3:17082600-17090000	Weak transcription	Fetal Brain Female	brain
45	chr3:17082600-17097000	Weak transcription	Sigmoid Colon	Sigmoid Colon
46	chr3:17082800-17086800	Weak transcription	HUES48 Cell Line	embryonic stem cell
47	chr3:17082800-17086800	Weak transcription	Rectal Smooth Muscle	rectum
48	chr3:17083000-17086600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
49	chr3:17083000-17096600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
50	chr3:17083000-17097200	Weak transcription	NH-A	brain

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