Variant report

Variant	rs3924136
Chromosome Location	chr3:17034326-17034327
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:17028484..17030023-chr3:17033756..17036202,2	K562	blood:

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11128817	0.85[ASN][1000 genomes]
rs1372073	0.92[ASN][1000 genomes]
rs17043036	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17043079	1.00[CHB][hapmap];0.88[MEX][hapmap];1.00[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs17043092	0.80[AMR][1000 genomes]
rs34797423	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3924135	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3924137	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73153213	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7619669	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv963480	chr3:17031904-17038082	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:49 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:17014800-17038800	Weak transcription	Primary B cells from cord blood	blood
2	chr3:17026800-17041200	Enhancers	Primary T helper cells PMA-I stimulated	--
3	chr3:17027200-17035400	Weak transcription	Fetal Brain Female	brain
4	chr3:17027800-17034400	Weak transcription	Ovary	ovary
5	chr3:17028400-17039600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
6	chr3:17029000-17034400	Weak transcription	Sigmoid Colon	Sigmoid Colon
7	chr3:17029200-17034400	Weak transcription	Skeletal Muscle Male	skeletal muscle
8	chr3:17029400-17042200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
9	chr3:17030000-17036200	Weak transcription	Primary hematopoietic stem cells	blood
10	chr3:17030200-17035800	Weak transcription	Brain Anterior Caudate	brain
11	chr3:17030200-17039200	Enhancers	Primary T helper naive cells from peripheral blood	blood
12	chr3:17030600-17034600	Weak transcription	Pancreatic Islets	Pancreatic Islet
13	chr3:17031200-17038200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
14	chr3:17031600-17035000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
15	chr3:17031800-17035000	Enhancers	Primary T cells fromperipheralblood	blood
16	chr3:17031800-17041200	Enhancers	Primary T helper cells fromperipheralblood	blood
17	chr3:17032600-17036400	Weak transcription	Fetal Intestine Small	intestine
18	chr3:17032600-17037600	Weak transcription	Lung	lung
19	chr3:17032800-17036400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
20	chr3:17032800-17036600	Enhancers	Primary T killer memory cells from peripheral blood	blood
21	chr3:17033400-17034800	Enhancers	Pancreas	Pancrea
22	chr3:17033400-17036400	Weak transcription	Thymus	Thymus
23	chr3:17033400-17040200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
24	chr3:17033600-17036000	Genic enhancers	Primary T cells from cord blood	blood
25	chr3:17033600-17038200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
26	chr3:17033800-17034600	Enhancers	Spleen	Spleen
27	chr3:17033800-17034800	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
28	chr3:17033800-17035000	Enhancers	Primary B cells from peripheral blood	blood
29	chr3:17033800-17035000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
30	chr3:17033800-17035000	Enhancers	Gastric	stomach
31	chr3:17033800-17035000	Enhancers	Left Ventricle	heart
32	chr3:17033800-17035000	Enhancers	Psoas Muscle	Psoas
33	chr3:17033800-17035000	Enhancers	Right Ventricle	heart
34	chr3:17033800-17035600	Enhancers	Fetal Heart	heart
35	chr3:17033800-17036200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
36	chr3:17033800-17037200	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
37	chr3:17034000-17034400	Enhancers	Esophagus	oesophagus
38	chr3:17034000-17034600	Enhancers	Monocytes-CD14+_RO01746	blood
39	chr3:17034000-17035000	Enhancers	Right Atrium	heart
40	chr3:17034000-17035000	Enhancers	Skeletal Muscle Female	skeletal muscle
41	chr3:17034000-17035000	Enhancers	Small Intestine	intestine
42	chr3:17034000-17036200	Enhancers	Hela-S3	cervix
43	chr3:17034000-17038200	Enhancers	Stomach Mucosa	stomach
44	chr3:17034200-17034400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
45	chr3:17034200-17034400	Enhancers	Aorta	Aorta
46	chr3:17034200-17034600	Enhancers	GM12878-XiMat	blood
47	chr3:17034200-17035000	Enhancers	Primary monocytes fromperipheralblood	blood
48	chr3:17034200-17035400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
49	chr3:17034200-17037800	Enhancers	Liver	Liver

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