Variant report

Variant	rs1372073
Chromosome Location	chr3:16955220-16955221
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:16946510..16948646-chr3:16954860..16957312,2	K562	blood:

rs_ID	r²[population]
rs10510468	1.00[EUR][1000 genomes]
rs11128817	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs11917952	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17042974	1.00[CEU][hapmap]
rs17043036	1.00[CHB][hapmap];0.92[ASN][1000 genomes]
rs17043079	1.00[CHB][hapmap]
rs1992379	1.00[JPT][hapmap]
rs2347939	1.00[JPT][hapmap]
rs34797423	1.00[CHB][hapmap];0.92[ASN][1000 genomes]
rs3924135	0.92[ASN][1000 genomes]
rs3924136	1.00[CHB][hapmap];0.92[ASN][1000 genomes]
rs3924137	1.00[CHB][hapmap];0.92[ASN][1000 genomes]
rs6800378	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73146924	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73153213	0.92[ASN][1000 genomes]
rs7619669	0.92[ASN][1000 genomes]

Chromatin state (count:54 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:16940800-16962200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr3:16941800-16959400	Enhancers	Primary B cells from peripheral blood	blood
3	chr3:16946200-16959000	Weak transcription	Aorta	Aorta
4	chr3:16949000-16965400	Enhancers	Primary T helper cells PMA-I stimulated	--
5	chr3:16949200-16958400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr3:16949200-16958400	Weak transcription	Adipose Nuclei	Adipose
7	chr3:16949200-16958400	Weak transcription	Gastric	stomach
8	chr3:16949200-16958800	Weak transcription	Duodenum Mucosa	Duodenum
9	chr3:16949200-16961200	Weak transcription	Rectal Mucosa Donor 29	rectum
10	chr3:16949400-16958400	Weak transcription	Stomach Mucosa	stomach
11	chr3:16949800-16958400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
12	chr3:16950000-16958600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr3:16950200-16957000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
14	chr3:16951800-16969200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
15	chr3:16952000-16957200	Weak transcription	Right Atrium	heart
16	chr3:16952000-16958400	Weak transcription	Pancreas	Pancrea
17	chr3:16952600-16957600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
18	chr3:16952800-16955600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
19	chr3:16952800-16964600	Weak transcription	Ovary	ovary
20	chr3:16953000-16955600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
21	chr3:16953200-16955600	Enhancers	Primary T helper cells fromperipheralblood	blood
22	chr3:16953400-16955600	Enhancers	Primary neutrophils fromperipheralblood	blood
23	chr3:16953400-16955600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
24	chr3:16953400-16955800	Enhancers	Primary T killer memory cells from peripheral blood	blood
25	chr3:16953800-16958200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chr3:16953800-16960400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
27	chr3:16954000-16955600	Enhancers	Left Ventricle	heart
28	chr3:16954400-16955400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
29	chr3:16954400-16957200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr3:16954400-16957200	Weak transcription	Skeletal Muscle Male	skeletal muscle
31	chr3:16954400-16958400	Weak transcription	NHDF-Ad	bronchial
32	chr3:16954600-16956200	Weak transcription	Primary hematopoietic stem cells	blood
33	chr3:16954600-16956400	Weak transcription	Liver	Liver
34	chr3:16954600-16957200	Weak transcription	Small Intestine	intestine
35	chr3:16954600-16957800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
36	chr3:16954600-16958400	Weak transcription	Spleen	Spleen
37	chr3:16954800-16955400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
38	chr3:16954800-16955400	Weak transcription	Fetal Heart	heart
39	chr3:16954800-16956200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
40	chr3:16954800-16956600	Weak transcription	Primary T cells from cord blood	blood
41	chr3:16954800-16957000	Weak transcription	Brain Anterior Caudate	brain
42	chr3:16954800-16957200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
43	chr3:16954800-16957200	Weak transcription	Primary T cells fromperipheralblood	blood
44	chr3:16954800-16957400	Weak transcription	Psoas Muscle	Psoas
45	chr3:16954800-16957800	Enhancers	Primary B cells from cord blood	blood
46	chr3:16954800-16958400	Weak transcription	Brain Hippocampus Middle	brain
47	chr3:16954800-16958400	Weak transcription	Right Ventricle	heart
48	chr3:16954800-16958400	Weak transcription	Sigmoid Colon	Sigmoid Colon
49	chr3:16954800-16965400	Weak transcription	Monocytes-CD14+_RO01746	blood
50	chr3:16955000-16955400	Active TSS	GM12878-XiMat	blood

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