Variant report

Variant	rs17044185
Chromosome Location	chr2:115966363-115966364
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs1516313	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17355553	1.00[EUR][1000 genomes]
rs17355616	0.95[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs17355686	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17355812	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17452755	1.00[EUR][1000 genomes]
rs17452958	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17452993	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2067699	1.00[EUR][1000 genomes]
rs57725264	0.81[AMR][1000 genomes]
rs6542252	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6722872	1.00[EUR][1000 genomes]
rs6740109	1.00[EUR][1000 genomes]
rs6758309	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6759005	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7584532	0.81[EUR][1000 genomes]
rs7600915	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014713	chr2:115858427-116018055	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv1001542	chr2:115920847-116082585	Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv834339	chr2:115953298-116132979	Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:115965200-115969200	Weak transcription	HUES64 Cell Line	embryonic stem cell
2	chr2:115965200-115969400	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr2:115965400-115966800	Enhancers	Cortex derived primary cultured neurospheres	brain
4	chr2:115965600-115971000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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