Variant report

Variant	rs17452958
Chromosome Location	chr2:115992688-115992689
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs1516313	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17044185	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17355553	0.91[EUR][1000 genomes]
rs17355616	0.91[EUR][1000 genomes]
rs17355686	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17355812	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17452755	0.91[EUR][1000 genomes]
rs17452993	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2067699	0.91[EUR][1000 genomes]
rs57725264	0.81[AMR][1000 genomes]
rs6542252	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6722872	0.92[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs6740109	0.91[EUR][1000 genomes]
rs6758309	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6759005	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7584532	0.81[EUR][1000 genomes]
rs7600915	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014713	chr2:115858427-116018055	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv1001542	chr2:115920847-116082585	Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv834339	chr2:115953298-116132979	Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv522754	chr2:115983419-116003178	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:115989200-115994600	Enhancers	Fetal Intestine Large	intestine
2	chr2:115989800-115993200	Weak transcription	Pancreas	Pancrea
3	chr2:115989800-115994400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr2:115992000-115994600	Active TSS	Fetal Adrenal Gland	Adrenal Gland
5	chr2:115992200-115993000	Weak transcription	Fetal Intestine Small	intestine

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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