Variant report

Variant	rs57725264
Chromosome Location	chr2:116056099-116056100
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs1516313	0.81[AMR][1000 genomes]
rs17044185	0.81[AMR][1000 genomes]
rs17355686	0.81[AMR][1000 genomes]
rs17355812	0.81[AMR][1000 genomes]
rs17355902	0.86[EUR][1000 genomes]
rs17452958	0.81[AMR][1000 genomes]
rs17452993	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs17823041	0.92[EUR][1000 genomes]
rs6542252	0.81[AMR][1000 genomes]
rs6706174	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6706690	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6758309	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6759005	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7575931	0.88[EUR][1000 genomes]
rs7580309	0.90[EUR][1000 genomes]
rs7584532	0.80[EUR][1000 genomes]
rs7599553	0.90[EUR][1000 genomes]
rs7600915	0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1001542	chr2:115920847-116082585	Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv834339	chr2:115953298-116132979	Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:116050800-116068000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
2	chr2:116053400-116056400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr2:116053800-116056200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr2:116054000-116057000	Weak transcription	Cortex derived primary cultured neurospheres	brain
5	chr2:116056000-116056200	Enhancers	H9 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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