Variant report

Variant	rs17355902
Chromosome Location	chr2:116148560-116148561
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs17823041	0.94[EUR][1000 genomes]
rs57725264	0.86[EUR][1000 genomes]
rs6706174	0.92[EUR][1000 genomes]
rs6706690	0.83[EUR][1000 genomes]
rs6720855	0.84[EUR][1000 genomes]
rs7575931	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7580309	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7599553	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv874918	chr2:116098665-116183946	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	n/a	n/a	inside rSNPs	diseases
2	nsv874919	chr2:116130709-116219686	ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:116144800-116151200	Weak transcription	HUES64 Cell Line	embryonic stem cell
2	chr2:116144800-116151200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
3	chr2:116144800-116151400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr2:116144800-116151600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr2:116144800-116152600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr2:116146400-116151200	Weak transcription	HUES48 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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