Variant report

Variant	rs6706690
Chromosome Location	chr2:116047164-116047165
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs17355902	0.83[EUR][1000 genomes]
rs17452993	0.80[EUR][1000 genomes]
rs17823041	0.88[EUR][1000 genomes]
rs57725264	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6706174	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6758309	0.80[EUR][1000 genomes]
rs6759005	0.80[EUR][1000 genomes]
rs7575931	0.84[EUR][1000 genomes]
rs7580309	0.86[EUR][1000 genomes]
rs7599553	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1001542	chr2:115920847-116082585	Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv834339	chr2:115953298-116132979	Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:116043000-116051600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr2:116043400-116052400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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