Variant report

Variant	rs170461
Chromosome Location	chr9:102121956-102121957
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:3)
LncRNA
region (count:3)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:3 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr9:102115816..102118085-chr9:102120059..102122026,2	K562	blood:
2	chr9:102120874..102123601-chr9:102136796..102138588,2	MCF-7	breast:
3	chr9:102121486..102123423-chr9:102126171..102128495,2	K562	blood:

(count:3 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ALG2-6	chr9:102121917-102122159	NONHSAT133658
2	lnc-ALG2-6	chr9:102121914-102122159	NONHSAT133657
3	lnc-ALG2-6	chr9:102121914-102122159	NONHSAT133656

No data

Variant related genes	Relation type
ENSG00000271086	Chromatin interaction

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10491654	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10739780	0.82[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs10760680	0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10819657	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1323470	0.82[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs1555572	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1555573	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1626179	0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1648636	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs16918536	0.98[ASN][1000 genomes]
rs1746153	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs192965	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2281728	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2586563	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs323723	0.91[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs323724	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs323725	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs323726	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs323734	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs323735	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs398150	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs398676	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs417512	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs439733	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4742768	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs696875	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs696876	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs701343	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs701344	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs701347	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs701349	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs701350	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs7023945	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7024065	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7029079	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7030379	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7037489	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7038667	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7871334	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs988245	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893620	chr9:102029791-102194921	Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv831667	chr9:102068047-102285691	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1046898	chr9:102111890-102163313	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:102114800-102131600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr9:102116400-102124400	Weak transcription	Colon Smooth Muscle	Colon
3	chr9:102118200-102123400	Enhancers	Left Ventricle	heart
4	chr9:102118200-102124600	Enhancers	Psoas Muscle	Psoas
5	chr9:102119400-102123800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr9:102120200-102123400	Weak transcription	Liver	Liver
7	chr9:102120200-102123800	Weak transcription	Adipose Nuclei	Adipose
8	chr9:102120600-102122400	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
9	chr9:102120600-102122800	Enhancers	Right Ventricle	heart
10	chr9:102120600-102126200	Enhancers	Fetal Brain Male	brain
11	chr9:102120600-102126800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr9:102120800-102124200	Weak transcription	Duodenum Smooth Muscle	Duodenum
13	chr9:102121000-102122000	Bivalent Enhancer	Fetal Muscle Trunk	muscle
14	chr9:102121000-102122200	Weak transcription	Fetal Brain Female	brain
15	chr9:102121000-102128200	Weak transcription	Right Atrium	heart
16	chr9:102121200-102122400	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
17	chr9:102121200-102124600	Bivalent Enhancer	Fetal Muscle Leg	muscle
18	chr9:102121400-102122200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr9:102121800-102123400	Enhancers	Fetal Heart	heart

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