Variant report

Variant	rs7029079
Chromosome Location	chr9:102127931-102127932
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:102125792..102128409-chr9:102134620..102136717,2	MCF-7	breast:
2	chr9:102121486..102123423-chr9:102126171..102128495,2	K562	blood:

Variant related genes	Relation type
ENSG00000271086	Chromatin interaction

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10491654	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10739780	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10760680	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10819657	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1323470	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1555572	0.94[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1555573	0.94[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1626179	0.88[ASN][1000 genomes]
rs1648636	0.86[ASN][1000 genomes]
rs16918536	0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs170461	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1746153	0.93[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs192965	0.83[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs2281728	0.94[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2586563	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs323723	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs323724	0.83[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs323725	0.83[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs323726	0.85[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs323734	0.83[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs323735	0.83[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs398150	0.83[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs398676	0.93[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs417512	0.83[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs439733	0.83[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs4742768	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs696875	0.83[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs696876	0.83[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs701343	0.85[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs701344	0.83[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs701347	0.83[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs701349	0.83[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs701350	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7023945	0.94[AMR][1000 genomes];0.84[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7024065	0.94[AMR][1000 genomes];0.84[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7030379	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7037489	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7038667	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7871334	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs988245	0.83[AMR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893620	chr9:102029791-102194921	Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv831667	chr9:102068047-102285691	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1046898	chr9:102111890-102163313	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:102114800-102131600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr9:102121000-102128200	Weak transcription	Right Atrium	heart
3	chr9:102122800-102129800	Weak transcription	Right Ventricle	heart
4	chr9:102123400-102129800	Weak transcription	Left Ventricle	heart
5	chr9:102124400-102130200	Weak transcription	Duodenum Smooth Muscle	Duodenum
6	chr9:102124600-102128600	Weak transcription	Psoas Muscle	Psoas
7	chr9:102125000-102128800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr9:102125000-102130400	Weak transcription	Colon Smooth Muscle	Colon
9	chr9:102125600-102130200	Weak transcription	Fetal Brain Female	brain
10	chr9:102125800-102129600	Weak transcription	Fetal Thymus	thymus
11	chr9:102126200-102129400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr9:102126200-102129800	Weak transcription	Fetal Brain Male	brain
13	chr9:102126600-102131000	Enhancers	Fetal Heart	heart
14	chr9:102126800-102130400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr9:102127000-102129000	Enhancers	Placenta	Placenta
16	chr9:102127200-102130400	Enhancers	GM12878-XiMat	blood
17	chr9:102127200-102130400	Enhancers	NHLF	lung
18	chr9:102127400-102128200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr9:102127400-102129800	Enhancers	Skeletal Muscle Male	skeletal muscle
20	chr9:102127400-102130400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr9:102127600-102128200	Enhancers	Breast Myoepithelial Primary Cells	Breast
22	chr9:102127600-102128200	Enhancers	HMEC	breast
23	chr9:102127600-102128800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
24	chr9:102127600-102130200	Enhancers	Skeletal Muscle Female	skeletal muscle
25	chr9:102127600-102130200	Enhancers	NHDF-Ad	bronchial
26	chr9:102127600-102130600	Enhancers	Lung	lung
27	chr9:102127800-102128400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr9:102127800-102129800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr9:102127800-102130400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
30	chr9:102127800-102130600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
31	chr9:102127800-102130600	Enhancers	Fetal Muscle Leg	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links