Variant report

Variant	rs17050198
Chromosome Location	chr4:119896344-119896345
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:119890629..119893657-chr4:119893845..119896663,3	K562	blood:

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10004234	1.00[AMR][1000 genomes]
rs10518314	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1380164	1.00[AMR][1000 genomes]
rs17050178	1.00[AMR][1000 genomes]
rs17050181	1.00[AMR][1000 genomes]
rs17050185	1.00[AMR][1000 genomes]
rs17050186	1.00[AMR][1000 genomes]
rs17050188	1.00[AMR][1000 genomes]
rs17050194	1.00[AMR][1000 genomes]
rs17839101	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916641	chr4:119780023-120777320	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
2	nsv948802	chr4:119844269-120208926	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:119886600-119896800	Enhancers	Rectal Smooth Muscle	rectum
2	chr4:119890400-119896400	Enhancers	Colon Smooth Muscle	Colon
3	chr4:119890600-119898200	Weak transcription	Fetal Stomach	stomach
4	chr4:119892400-119897000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr4:119892600-119896800	Enhancers	Skeletal Muscle Female	skeletal muscle
6	chr4:119892800-119897000	Enhancers	Breast Myoepithelial Primary Cells	Breast
7	chr4:119893600-119901400	Weak transcription	Ovary	ovary
8	chr4:119893600-119902600	Weak transcription	Right Atrium	heart
9	chr4:119893800-119897000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr4:119893800-119897000	Enhancers	Stomach Smooth Muscle	stomach
11	chr4:119894200-119897200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr4:119894200-119897200	Enhancers	Skeletal Muscle Male	skeletal muscle
13	chr4:119894600-119897000	Enhancers	NHDF-Ad	bronchial
14	chr4:119894800-119896400	Weak transcription	Duodenum Smooth Muscle	Duodenum
15	chr4:119895000-119897000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr4:119895000-119897200	Enhancers	Osteobl	bone
17	chr4:119895400-119896600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr4:119895400-119897400	Enhancers	Fetal Intestine Large	intestine
19	chr4:119895600-119896800	Enhancers	HMEC	breast
20	chr4:119895600-119896800	Enhancers	NHLF	lung
21	chr4:119895600-119897200	Enhancers	Fetal Intestine Small	intestine
22	chr4:119895800-119896400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr4:119895800-119896400	Enhancers	HUVEC	blood vessel
24	chr4:119895800-119896800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
25	chr4:119895800-119897000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr4:119896000-119896400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
27	chr4:119896000-119896400	Enhancers	Adipose Nuclei	Adipose
28	chr4:119896000-119896600	Enhancers	NH-A	brain
29	chr4:119896000-119896800	Enhancers	Right Ventricle	heart
30	chr4:119896000-119897000	Enhancers	Aorta	Aorta
31	chr4:119896000-119897000	Enhancers	Fetal Heart	heart
32	chr4:119896200-119896400	Flanking Active TSS	Muscle Satellite Cultured Cells	--
33	chr4:119896200-119896400	Enhancers	Esophagus	oesophagus
34	chr4:119896200-119896400	Enhancers	Fetal Thymus	thymus
35	chr4:119896200-119896600	Enhancers	Psoas Muscle	Psoas
36	chr4:119896200-119896800	Enhancers	Left Ventricle	heart
37	chr4:119896200-119897000	Enhancers	Duodenum Mucosa	Duodenum
38	chr4:119896200-119897000	Enhancers	Fetal Muscle Leg	muscle
39	chr4:119896200-119897000	Enhancers	Small Intestine	intestine
40	chr4:119896200-119897000	Enhancers	HSMMtube	muscle

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