Variant report

Variant	rs17839101
Chromosome Location	chr4:119903145-119903146
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:119901491..119903376-chr4:120207144..120209665,2	MCF-7	breast:
2	chr4:119902642..119903160-chr4:120548395..120549228,2	K562	blood:
3	chr4:119902678..119903605-chr4:120207219..120207879,4	K562	blood:
4	chr4:119902777..119905378-chr4:119907189..119909991,2	MCF-7	breast:
5	chr4:119902691..119903668-chr4:119960868..119961628,4	MCF-7	breast:
6	chr17:27717127..27719243-chr4:119902588..119905576,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000138735	Chromatin interaction
ENSG00000264808	Chromatin interaction
ENSG00000160551	Chromatin interaction
ENSG00000263719	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10004234	1.00[AMR][1000 genomes]
rs10518314	1.00[AMR][1000 genomes]
rs1380164	1.00[AMR][1000 genomes]
rs17050178	1.00[AMR][1000 genomes]
rs17050181	1.00[AMR][1000 genomes]
rs17050185	1.00[AMR][1000 genomes]
rs17050186	1.00[AMR][1000 genomes]
rs17050188	1.00[AMR][1000 genomes]
rs17050194	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17050198	1.00[AMR][1000 genomes]
rs17328771	0.85[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916641	chr4:119780023-120777320	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
2	nsv948802	chr4:119844269-120208926	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:119896400-119907600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr4:119896800-119903600	Weak transcription	Right Ventricle	heart
3	chr4:119900600-119903200	Weak transcription	HMEC	breast
4	chr4:119900800-119903200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr4:119901400-119903200	Enhancers	Aorta	Aorta
6	chr4:119901400-119903200	Enhancers	Left Ventricle	heart
7	chr4:119901400-119905400	Enhancers	Ovary	ovary
8	chr4:119901400-119907000	Enhancers	Psoas Muscle	Psoas
9	chr4:119901400-119911600	Enhancers	Rectal Smooth Muscle	rectum
10	chr4:119901600-119903800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr4:119901600-119904600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr4:119901600-119904600	Enhancers	Osteobl	bone
13	chr4:119901800-119904200	Enhancers	Duodenum Smooth Muscle	Duodenum
14	chr4:119902000-119904000	Enhancers	Fetal Heart	heart
15	chr4:119902000-119904400	Enhancers	HSMMtube	muscle
16	chr4:119902000-119904600	Enhancers	NHDF-Ad	bronchial
17	chr4:119902000-119904800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr4:119902000-119904800	Enhancers	NH-A	brain
19	chr4:119902200-119903400	Enhancers	Cortex derived primary cultured neurospheres	brain
20	chr4:119902200-119903600	Enhancers	HUES64 Cell Line	embryonic stem cell
21	chr4:119902200-119904200	Enhancers	NHLF	lung
22	chr4:119902200-119904600	Enhancers	HSMM	muscle
23	chr4:119902200-119905800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr4:119902200-119906400	Enhancers	Breast Myoepithelial Primary Cells	Breast
25	chr4:119902600-119903200	Enhancers	Right Atrium	heart
26	chr4:119902600-119903600	Enhancers	Brain Anterior Caudate	brain
27	chr4:119902600-119907000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
28	chr4:119902800-119903400	Enhancers	Brain Substantia Nigra	brain
29	chr4:119902800-119904000	Enhancers	Muscle Satellite Cultured Cells	--
30	chr4:119902800-119904600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
31	chr4:119903000-119903200	Enhancers	Skeletal Muscle Male	skeletal muscle
32	chr4:119903000-119903400	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
33	chr4:119903000-119903400	Active TSS	Skeletal Muscle Female	skeletal muscle
34	chr4:119903000-119903400	Active TSS	Stomach Smooth Muscle	stomach
35	chr4:119903000-119903600	Enhancers	Primary monocytes fromperipheralblood	blood
36	chr4:119903000-119905600	Weak transcription	Fetal Muscle Leg	muscle
37	chr4:119903000-119909800	Weak transcription	Fetal Stomach	stomach
38	chr4:119903000-119910200	Enhancers	Colon Smooth Muscle	Colon

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