Variant report

Variant	rs17050178
Chromosome Location	chr4:119921548-119921549
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:119919801..119922456-chr4:120217871..120220047,2	MCF-7	breast:

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10004234	1.00[AMR][1000 genomes]
rs10018784	1.00[EUR][1000 genomes]
rs10028761	1.00[EUR][1000 genomes]
rs10518314	1.00[AMR][1000 genomes]
rs11944900	1.00[EUR][1000 genomes]
rs1380164	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1387982	1.00[EUR][1000 genomes]
rs17050181	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17050185	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17050186	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17050188	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17050190	1.00[EUR][1000 genomes]
rs17050194	1.00[AMR][1000 genomes]
rs17050198	1.00[AMR][1000 genomes]
rs17328771	1.00[EUR][1000 genomes]
rs17839101	1.00[AMR][1000 genomes]
rs28399902	1.00[EUR][1000 genomes]
rs28517711	1.00[EUR][1000 genomes]
rs28649022	1.00[EUR][1000 genomes]
rs28654142	1.00[EUR][1000 genomes]
rs28703229	1.00[EUR][1000 genomes]
rs28711592	1.00[EUR][1000 genomes]
rs56777348	1.00[EUR][1000 genomes]
rs59523444	1.00[EUR][1000 genomes]
rs59546216	1.00[EUR][1000 genomes]
rs59918004	1.00[EUR][1000 genomes]
rs61307436	1.00[EUR][1000 genomes]
rs72907287	1.00[EUR][1000 genomes]
rs72907288	1.00[EUR][1000 genomes]
rs72909247	1.00[EUR][1000 genomes]
rs72909255	1.00[EUR][1000 genomes]
rs72909257	1.00[EUR][1000 genomes]
rs72909259	1.00[EUR][1000 genomes]
rs72909264	1.00[EUR][1000 genomes]
rs72909273	1.00[EUR][1000 genomes]
rs9884217	1.00[EUR][1000 genomes]
rs9884412	1.00[EUR][1000 genomes]
rs9884854	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916641	chr4:119780023-120777320	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
2	nsv948802	chr4:119844269-120208926	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:119910400-119931000	Weak transcription	Right Atrium	heart
2	chr4:119913400-119923000	Enhancers	Colon Smooth Muscle	Colon
3	chr4:119917600-119931000	Weak transcription	Aorta	Aorta
4	chr4:119917600-119932200	Weak transcription	Left Ventricle	heart
5	chr4:119918200-119922800	Enhancers	Rectal Smooth Muscle	rectum
6	chr4:119919400-119921600	Weak transcription	NHLF	lung
7	chr4:119919400-119925000	Weak transcription	HUES6 Cell Line	embryonic stem cell
8	chr4:119920200-119922400	Enhancers	Psoas Muscle	Psoas
9	chr4:119920800-119921600	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
10	chr4:119920800-119921800	Enhancers	H9 Cell Line	embryonic stem cell
11	chr4:119921000-119921800	Enhancers	Right Ventricle	heart
12	chr4:119921000-119921800	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
13	chr4:119921000-119922000	Enhancers	Ovary	ovary
14	chr4:119921000-119922200	Enhancers	Breast Myoepithelial Primary Cells	Breast
15	chr4:119921000-119922400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr4:119921200-119921600	Flanking Active TSS	Fetal Heart	heart
17	chr4:119921200-119921600	Enhancers	Fetal Muscle Leg	muscle
18	chr4:119921200-119921800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
19	chr4:119921200-119921800	Enhancers	HUES48 Cell Line	embryonic stem cell
20	chr4:119921200-119921800	Enhancers	iPS-15b Cell Line	embryonic stem cell
21	chr4:119921200-119921800	Enhancers	HSMMtube	muscle
22	chr4:119921200-119921800	Enhancers	NHDF-Ad	bronchial
23	chr4:119921200-119922000	Enhancers	ES-I3 Cell Line	embryonic stem cell
24	chr4:119921200-119922000	Enhancers	iPS-20b Cell Line	embryonic stem cell
25	chr4:119921200-119922000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
26	chr4:119921200-119922000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr4:119921200-119922000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
28	chr4:119921200-119922200	Enhancers	iPS-18 Cell Line	embryonic stem cell
29	chr4:119921400-119921800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
30	chr4:119921400-119921800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
31	chr4:119921400-119921800	Enhancers	Muscle Satellite Cultured Cells	--
32	chr4:119921400-119921800	Enhancers	Small Intestine	intestine
33	chr4:119921400-119921800	Flanking Active TSS	Stomach Smooth Muscle	stomach
34	chr4:119921400-119921800	Enhancers	Osteobl	bone
35	chr4:119921400-119922000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
36	chr4:119921400-119924800	Weak transcription	HUES64 Cell Line	embryonic stem cell
37	chr4:119921400-119927200	Weak transcription	Fetal Stomach	stomach

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