Variant report

Variant	rs11944900
Chromosome Location	chr4:119858519-119858520
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10018784	1.00[EUR][1000 genomes]
rs10028761	1.00[EUR][1000 genomes]
rs1380164	1.00[EUR][1000 genomes]
rs1387982	1.00[EUR][1000 genomes]
rs17050178	1.00[EUR][1000 genomes]
rs17050181	1.00[EUR][1000 genomes]
rs17050185	1.00[EUR][1000 genomes]
rs17050186	1.00[EUR][1000 genomes]
rs17050188	1.00[EUR][1000 genomes]
rs17050190	1.00[EUR][1000 genomes]
rs17328771	1.00[EUR][1000 genomes]
rs28399902	1.00[EUR][1000 genomes]
rs28517711	1.00[EUR][1000 genomes]
rs28649022	1.00[EUR][1000 genomes]
rs28654142	1.00[EUR][1000 genomes]
rs28703229	1.00[EUR][1000 genomes]
rs28711592	1.00[EUR][1000 genomes]
rs56777348	1.00[EUR][1000 genomes]
rs59523444	1.00[EUR][1000 genomes]
rs59546216	1.00[EUR][1000 genomes]
rs59918004	1.00[EUR][1000 genomes]
rs61307436	1.00[EUR][1000 genomes]
rs72907287	1.00[EUR][1000 genomes]
rs72907288	1.00[EUR][1000 genomes]
rs72909247	1.00[EUR][1000 genomes]
rs72909255	1.00[EUR][1000 genomes]
rs72909257	1.00[EUR][1000 genomes]
rs72909259	1.00[EUR][1000 genomes]
rs72909264	1.00[EUR][1000 genomes]
rs72909273	1.00[EUR][1000 genomes]
rs9884217	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9884412	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9884854	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916641	chr4:119780023-120777320	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
2	nsv948802	chr4:119844269-120208926	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:119842600-119861800	Weak transcription	Right Ventricle	heart
2	chr4:119847400-119861800	Weak transcription	Left Ventricle	heart
3	chr4:119848400-119860200	Weak transcription	Skeletal Muscle Female	skeletal muscle
4	chr4:119848400-119861800	Weak transcription	Right Atrium	heart
5	chr4:119851200-119860400	Weak transcription	Fetal Intestine Small	intestine
6	chr4:119855400-119860200	Weak transcription	Brain Anterior Caudate	brain
7	chr4:119856600-119858600	Weak transcription	Stomach Smooth Muscle	stomach
8	chr4:119857000-119859600	Weak transcription	Rectal Smooth Muscle	rectum
9	chr4:119857000-119859800	Enhancers	Ovary	ovary
10	chr4:119857200-119859800	Weak transcription	HSMMtube	muscle
11	chr4:119857400-119860000	Weak transcription	Colon Smooth Muscle	Colon
12	chr4:119857400-119860200	Weak transcription	Skeletal Muscle Male	skeletal muscle
13	chr4:119857400-119862200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr4:119857400-119862200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr4:119857800-119861600	Weak transcription	Fetal Stomach	stomach
16	chr4:119858000-119858600	Enhancers	Aorta	Aorta
17	chr4:119858000-119860200	Weak transcription	Fetal Lung	lung
18	chr4:119858000-119862200	Weak transcription	NHDF-Ad	bronchial
19	chr4:119858000-119862600	Weak transcription	Primary neutrophils fromperipheralblood	blood
20	chr4:119858400-119858800	Enhancers	Duodenum Smooth Muscle	Duodenum
21	chr4:119858400-119858800	Enhancers	Psoas Muscle	Psoas
22	chr4:119858400-119860200	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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