Variant report

Variant	rs72909255
Chromosome Location	chr4:119839290-119839291
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10018784	1.00[EUR][1000 genomes]
rs10028761	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11944900	1.00[EUR][1000 genomes]
rs1380164	1.00[EUR][1000 genomes]
rs1387982	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17050178	1.00[EUR][1000 genomes]
rs17050181	1.00[EUR][1000 genomes]
rs17050185	1.00[EUR][1000 genomes]
rs17050186	1.00[EUR][1000 genomes]
rs17050188	1.00[EUR][1000 genomes]
rs17050190	1.00[EUR][1000 genomes]
rs17328771	1.00[EUR][1000 genomes]
rs2061444	1.00[AMR][1000 genomes]
rs28399902	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28517711	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28649022	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28654142	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28703229	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28711592	1.00[EUR][1000 genomes]
rs56777348	1.00[EUR][1000 genomes]
rs59523444	1.00[EUR][1000 genomes]
rs59546216	1.00[EUR][1000 genomes]
rs59918004	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61307436	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72907287	1.00[EUR][1000 genomes]
rs72907288	1.00[EUR][1000 genomes]
rs72908515	1.00[AMR][1000 genomes]
rs72909247	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72909257	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72909259	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72909264	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72909273	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72914838	1.00[AMR][1000 genomes]
rs9307466	1.00[AMR][1000 genomes]
rs9884217	1.00[EUR][1000 genomes]
rs9884412	1.00[EUR][1000 genomes]
rs9884854	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916641	chr4:119780023-120777320	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	72 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:119826800-119839600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr4:119831400-119840400	Weak transcription	Right Ventricle	heart
3	chr4:119831600-119847200	Weak transcription	Right Atrium	heart
4	chr4:119832800-119840200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr4:119833000-119845600	Weak transcription	Aorta	Aorta
6	chr4:119836600-119841600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr4:119837600-119841800	Enhancers	Osteobl	bone
8	chr4:119838000-119839400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr4:119838000-119840600	Enhancers	Stomach Smooth Muscle	stomach
10	chr4:119838000-119841400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr4:119838200-119840200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
12	chr4:119838200-119840400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr4:119838200-119851600	Enhancers	Rectal Smooth Muscle	rectum
14	chr4:119838400-119842000	Weak transcription	Left Ventricle	heart
15	chr4:119838600-119839400	Enhancers	HUVEC	blood vessel
16	chr4:119838600-119839400	Enhancers	NHDF-Ad	bronchial
17	chr4:119838600-119840000	Enhancers	Hela-S3	cervix
18	chr4:119838600-119840000	Enhancers	NHEK	skin
19	chr4:119838600-119840400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr4:119838600-119840400	Weak transcription	Ovary	ovary
21	chr4:119838800-119839600	Enhancers	NH-A	brain
22	chr4:119838800-119840600	Enhancers	HSMMtube	muscle
23	chr4:119838800-119841400	Enhancers	NHLF	lung
24	chr4:119839000-119840200	Weak transcription	Fetal Stomach	stomach
25	chr4:119839000-119840600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr4:119839000-119840600	Enhancers	HSMM	muscle
27	chr4:119839200-119839400	Enhancers	Muscle Satellite Cultured Cells	--
28	chr4:119839200-119839600	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr4:119839200-119839800	Enhancers	HUES64 Cell Line	embryonic stem cell
30	chr4:119839200-119839800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
31	chr4:119839200-119839800	Enhancers	HMEC	breast
32	chr4:119839200-119840000	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
33	chr4:119839200-119840000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
34	chr4:119839200-119840200	Weak transcription	Colon Smooth Muscle	Colon
35	chr4:119839200-119840400	Enhancers	Brain Anterior Caudate	brain

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