Variant report

Variant	rs10018784
Chromosome Location	chr4:119850021-119850022
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10028761	1.00[EUR][1000 genomes]
rs11944900	1.00[EUR][1000 genomes]
rs1380164	1.00[EUR][1000 genomes]
rs1387982	1.00[EUR][1000 genomes]
rs17050178	1.00[EUR][1000 genomes]
rs17050181	1.00[EUR][1000 genomes]
rs17050185	1.00[EUR][1000 genomes]
rs17050186	1.00[EUR][1000 genomes]
rs17050188	1.00[EUR][1000 genomes]
rs17050190	1.00[EUR][1000 genomes]
rs17328771	1.00[EUR][1000 genomes]
rs28399902	1.00[EUR][1000 genomes]
rs28517711	1.00[EUR][1000 genomes]
rs28649022	1.00[EUR][1000 genomes]
rs28654142	1.00[EUR][1000 genomes]
rs28703229	1.00[EUR][1000 genomes]
rs28711592	1.00[EUR][1000 genomes]
rs28718468	0.86[AFR][1000 genomes]
rs56777348	1.00[EUR][1000 genomes]
rs59523444	1.00[EUR][1000 genomes]
rs59546216	1.00[EUR][1000 genomes]
rs59918004	1.00[EUR][1000 genomes]
rs61307436	1.00[EUR][1000 genomes]
rs72907287	1.00[EUR][1000 genomes]
rs72907288	1.00[EUR][1000 genomes]
rs72909247	1.00[EUR][1000 genomes]
rs72909255	1.00[EUR][1000 genomes]
rs72909257	1.00[EUR][1000 genomes]
rs72909259	1.00[EUR][1000 genomes]
rs72909264	1.00[EUR][1000 genomes]
rs72909273	1.00[EUR][1000 genomes]
rs9884217	1.00[EUR][1000 genomes]
rs9884412	1.00[EUR][1000 genomes]
rs9884854	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916641	chr4:119780023-120777320	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
2	nsv948802	chr4:119844269-120208926	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:119838200-119851600	Enhancers	Rectal Smooth Muscle	rectum
2	chr4:119841000-119858400	Weak transcription	Psoas Muscle	Psoas
3	chr4:119842600-119861800	Weak transcription	Right Ventricle	heart
4	chr4:119845000-119851800	Enhancers	Colon Smooth Muscle	Colon
5	chr4:119845600-119850400	Enhancers	Duodenum Smooth Muscle	Duodenum
6	chr4:119847400-119861800	Weak transcription	Left Ventricle	heart
7	chr4:119848400-119850200	Enhancers	Stomach Smooth Muscle	stomach
8	chr4:119848400-119851600	Weak transcription	Ovary	ovary
9	chr4:119848400-119860200	Weak transcription	Skeletal Muscle Female	skeletal muscle
10	chr4:119848400-119861800	Weak transcription	Right Atrium	heart
11	chr4:119849000-119850400	Enhancers	Breast Myoepithelial Primary Cells	Breast
12	chr4:119849400-119850200	Enhancers	Brain Hippocampus Middle	brain
13	chr4:119849400-119857200	Weak transcription	Fetal Stomach	stomach
14	chr4:119849400-119858000	Weak transcription	Aorta	Aorta
15	chr4:119849800-119857200	Weak transcription	Skeletal Muscle Male	skeletal muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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