Variant report

Variant	rs59523444
Chromosome Location	chr4:119929932-119929933
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10018784	1.00[EUR][1000 genomes]
rs10028761	1.00[EUR][1000 genomes]
rs11944900	1.00[EUR][1000 genomes]
rs1380164	1.00[EUR][1000 genomes]
rs1387982	1.00[EUR][1000 genomes]
rs17050178	1.00[EUR][1000 genomes]
rs17050181	1.00[EUR][1000 genomes]
rs17050185	1.00[EUR][1000 genomes]
rs17050186	1.00[EUR][1000 genomes]
rs17050188	1.00[EUR][1000 genomes]
rs17050190	1.00[EUR][1000 genomes]
rs17328771	1.00[EUR][1000 genomes]
rs28399902	1.00[EUR][1000 genomes]
rs28517711	1.00[EUR][1000 genomes]
rs28649022	1.00[EUR][1000 genomes]
rs28654142	1.00[EUR][1000 genomes]
rs28703229	1.00[EUR][1000 genomes]
rs28711592	1.00[EUR][1000 genomes]
rs56777348	1.00[EUR][1000 genomes]
rs59546216	1.00[EUR][1000 genomes]
rs59918004	1.00[EUR][1000 genomes]
rs61307436	1.00[EUR][1000 genomes]
rs72907287	1.00[EUR][1000 genomes]
rs72907288	1.00[EUR][1000 genomes]
rs72909247	1.00[EUR][1000 genomes]
rs72909255	1.00[EUR][1000 genomes]
rs72909257	1.00[EUR][1000 genomes]
rs72909259	1.00[EUR][1000 genomes]
rs72909264	1.00[EUR][1000 genomes]
rs72909273	1.00[EUR][1000 genomes]
rs9884217	1.00[EUR][1000 genomes]
rs9884412	1.00[EUR][1000 genomes]
rs9884854	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916641	chr4:119780023-120777320	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
2	nsv948802	chr4:119844269-120208926	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:119910400-119931000	Weak transcription	Right Atrium	heart
2	chr4:119917600-119931000	Weak transcription	Aorta	Aorta
3	chr4:119917600-119932200	Weak transcription	Left Ventricle	heart
4	chr4:119922400-119930600	Weak transcription	Fetal Heart	heart
5	chr4:119922400-119933200	Weak transcription	Psoas Muscle	Psoas
6	chr4:119925000-119932000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr4:119927200-119930400	Enhancers	Rectal Smooth Muscle	rectum
8	chr4:119927400-119931600	Weak transcription	Right Ventricle	heart
9	chr4:119927400-119932200	Weak transcription	Ovary	ovary
10	chr4:119927400-119932200	Enhancers	Skeletal Muscle Male	skeletal muscle
11	chr4:119927400-119932800	Enhancers	Colon Smooth Muscle	Colon
12	chr4:119927600-119932200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr4:119928000-119930400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
14	chr4:119928000-119931200	Weak transcription	Fetal Stomach	stomach
15	chr4:119928800-119932800	Enhancers	Primary monocytes fromperipheralblood	blood
16	chr4:119929000-119930400	Weak transcription	Stomach Smooth Muscle	stomach
17	chr4:119929400-119931400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
18	chr4:119929600-119930800	Enhancers	Primary neutrophils fromperipheralblood	blood
19	chr4:119929600-119930800	Weak transcription	Skeletal Muscle Female	skeletal muscle

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links