Variant report

Variant	rs59546216
Chromosome Location	chr4:119913835-119913836
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10018784	1.00[EUR][1000 genomes]
rs10028761	1.00[EUR][1000 genomes]
rs11944900	1.00[EUR][1000 genomes]
rs1380164	1.00[EUR][1000 genomes]
rs1387982	1.00[EUR][1000 genomes]
rs17050178	1.00[EUR][1000 genomes]
rs17050181	1.00[EUR][1000 genomes]
rs17050185	1.00[EUR][1000 genomes]
rs17050186	1.00[EUR][1000 genomes]
rs17050188	1.00[EUR][1000 genomes]
rs17050190	1.00[EUR][1000 genomes]
rs17328771	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28399902	1.00[EUR][1000 genomes]
rs28517711	1.00[EUR][1000 genomes]
rs28649022	1.00[EUR][1000 genomes]
rs28654142	1.00[EUR][1000 genomes]
rs28703229	1.00[EUR][1000 genomes]
rs28711592	1.00[EUR][1000 genomes]
rs56777348	1.00[EUR][1000 genomes]
rs57189942	1.00[AMR][1000 genomes]
rs59523444	1.00[EUR][1000 genomes]
rs59918004	1.00[EUR][1000 genomes]
rs61307436	1.00[EUR][1000 genomes]
rs72907287	1.00[EUR][1000 genomes]
rs72907288	1.00[EUR][1000 genomes]
rs72909247	1.00[EUR][1000 genomes]
rs72909255	1.00[EUR][1000 genomes]
rs72909257	1.00[EUR][1000 genomes]
rs72909259	1.00[EUR][1000 genomes]
rs72909264	1.00[EUR][1000 genomes]
rs72909273	1.00[EUR][1000 genomes]
rs9884217	1.00[EUR][1000 genomes]
rs9884412	1.00[EUR][1000 genomes]
rs9884854	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916641	chr4:119780023-120777320	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
2	nsv948802	chr4:119844269-120208926	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:119908000-119921400	Weak transcription	Small Intestine	intestine
2	chr4:119910400-119931000	Weak transcription	Right Atrium	heart
3	chr4:119910600-119915000	Weak transcription	Fetal Stomach	stomach
4	chr4:119911200-119917800	Enhancers	Skeletal Muscle Female	skeletal muscle
5	chr4:119911400-119914200	Enhancers	Psoas Muscle	Psoas
6	chr4:119911400-119918600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr4:119911600-119914600	Weak transcription	HSMM	muscle
8	chr4:119911600-119914600	Weak transcription	NHLF	lung
9	chr4:119911600-119915000	Weak transcription	Muscle Satellite Cultured Cells	--
10	chr4:119911800-119915000	Weak transcription	HSMMtube	muscle
11	chr4:119912000-119914200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr4:119912400-119914800	Enhancers	Breast Myoepithelial Primary Cells	Breast
13	chr4:119912400-119915600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr4:119912600-119914000	Flanking Active TSS	Stomach Smooth Muscle	stomach
15	chr4:119912600-119917800	Enhancers	Rectal Smooth Muscle	rectum
16	chr4:119912800-119915600	Enhancers	Ovary	ovary
17	chr4:119913000-119914200	Enhancers	H9 Cell Line	embryonic stem cell
18	chr4:119913200-119915200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr4:119913200-119915600	Enhancers	Skeletal Muscle Male	skeletal muscle
20	chr4:119913200-119917200	Weak transcription	Aorta	Aorta
21	chr4:119913400-119914200	Enhancers	Left Ventricle	heart
22	chr4:119913400-119914600	Weak transcription	NHDF-Ad	bronchial
23	chr4:119913400-119923000	Enhancers	Colon Smooth Muscle	Colon
24	chr4:119913600-119914000	Enhancers	Duodenum Smooth Muscle	Duodenum
25	chr4:119913600-119914000	Enhancers	Lung	lung
26	chr4:119913600-119914200	Enhancers	Right Ventricle	heart
27	chr4:119913600-119918600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
28	chr4:119913600-119918800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr4:119913800-119914200	Enhancers	iPS-20b Cell Line	embryonic stem cell
30	chr4:119913800-119914400	Enhancers	iPS-15b Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links