Variant report

Variant	rs17055044
Chromosome Location	chr6:128130249-128130250
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10872324	0.82[CHB][hapmap]
rs10872327	0.81[ASN][1000 genomes]
rs11961168	0.82[CHB][hapmap]
rs11967147	0.82[CHB][hapmap]
rs12191259	0.82[CHB][hapmap]
rs12194548	1.00[CHB][hapmap]
rs12660845	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12660847	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12661098	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12661121	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12663768	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12664881	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12665648	0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13219045	0.82[CHB][hapmap]
rs1333767	1.00[CHB][hapmap]
rs17055025	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17055029	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17301984	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs269992	0.82[CHB][hapmap]
rs269993	0.82[CHB][hapmap]
rs269997	0.82[CHB][hapmap]
rs269998	0.82[CHB][hapmap]
rs270009	0.82[CHB][hapmap]
rs270010	0.82[CHB][hapmap]
rs58586522	0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs59993660	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6902933	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6934865	0.82[CHB][hapmap]
rs6935078	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6935256	0.82[CHB][hapmap]
rs6939770	0.82[CHB][hapmap]
rs6940280	0.82[CHB][hapmap]
rs7744896	0.82[CHB][hapmap]
rs7768836	0.82[CHB][hapmap]
rs7772357	1.00[CHB][hapmap]
rs7774647	0.82[CHB][hapmap]
rs9372883	1.00[CEU][hapmap];1.00[YRI][hapmap];0.83[EUR][1000 genomes]
rs9385442	1.00[CEU][hapmap];1.00[YRI][hapmap];0.83[EUR][1000 genomes]
rs9482835	0.82[CHB][hapmap]
rs9491858	0.82[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830799	chr6:128033100-128194511	Genic enhancers Enhancers Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:128115600-128139200	Weak transcription	Dnd41	blood
2	chr6:128117000-128131400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
3	chr6:128119200-128134200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
4	chr6:128127600-128131600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
5	chr6:128127600-128131800	Genic enhancers	Primary T helper cells PMA-I stimulated	--
6	chr6:128127600-128145800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
7	chr6:128127800-128134000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
8	chr6:128128000-128130400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
9	chr6:128128800-128130800	Enhancers	Primary T helper naive cells from peripheral blood	blood
10	chr6:128128800-128130800	Genic enhancers	Primary T killer memory cells from peripheral blood	blood
11	chr6:128129000-128131000	Enhancers	Primary T cells from cord blood	blood
12	chr6:128129200-128130400	Enhancers	Primary T helper cells fromperipheralblood	blood
13	chr6:128129400-128132400	Strong transcription	Fetal Thymus	thymus
14	chr6:128129600-128131400	Weak transcription	Thymus	Thymus
15	chr6:128129800-128130800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
16	chr6:128130200-128131400	Weak transcription	Primary T cells fromperipheralblood	blood

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