Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs12660845	0.89[CEU][hapmap];1.00[YRI][hapmap]
rs12660847	1.00[CEU][hapmap];1.00[YRI][hapmap];0.83[EUR][1000 genomes]
rs12661098	1.00[CEU][hapmap]
rs12661121	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs12663768	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs12664881	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs17055025	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs17055029	1.00[CEU][hapmap];1.00[YRI][hapmap];0.83[EUR][1000 genomes]
rs17055044	1.00[CEU][hapmap];1.00[YRI][hapmap];0.83[EUR][1000 genomes]
rs17301984	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs270005	0.88[ASN][1000 genomes]
rs270026	1.00[CHB][hapmap];0.85[ASN][1000 genomes]
rs270034	0.88[ASN][1000 genomes]
rs270037	1.00[CHB][hapmap];0.87[JPT][hapmap];0.88[ASN][1000 genomes]
rs270041	1.00[CHB][hapmap];0.86[JPT][hapmap];0.92[ASN][1000 genomes]
rs270044	1.00[CHB][hapmap];0.86[JPT][hapmap];0.92[ASN][1000 genomes]
rs270045	1.00[CHB][hapmap];0.87[JPT][hapmap];0.90[ASN][1000 genomes]
rs6902933	1.00[CEU][hapmap]
rs6935078	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs72618504	0.82[ASN][1000 genomes]
rs9372883	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830799	chr6:128033100-128194511	Genic enhancers Enhancers Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	esv1849854	chr6:128143774-128287313	Weak transcription Active TSS Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv1024516	chr6:128184182-128298278	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:128187400-128193400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
2	chr6:128188200-128193200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
3	chr6:128188200-128193200	Enhancers	Primary T helper cells fromperipheralblood	blood
4	chr6:128188400-128192600	Enhancers	Primary T helper naive cells from peripheral blood	blood
5	chr6:128188400-128192800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
6	chr6:128188400-128193000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
7	chr6:128188400-128193400	Enhancers	Primary T killer memory cells from peripheral blood	blood
8	chr6:128191400-128193400	Enhancers	Primary T cells from cord blood	blood
9	chr6:128191400-128198800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
10	chr6:128191600-128193800	Weak transcription	Primary T cells fromperipheralblood	blood
11	chr6:128191600-128193800	Weak transcription	Fetal Thymus	thymus
12	chr6:128191600-128198600	Weak transcription	Thymus	Thymus
13	chr6:128192200-128193000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
14	chr6:128192200-128193400	Enhancers	Primary T helper cells PMA-I stimulated	--
15	chr6:128192200-128193800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood

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