Variant report

Variant	rs270044
Chromosome Location	chr6:128186483-128186484
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs270005	0.99[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs270026	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs270034	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs270037	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs270041	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs270045	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7756237	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9372879	0.81[CHD][hapmap]
rs9372883	1.00[CHB][hapmap];0.87[JPT][hapmap];0.92[ASN][1000 genomes]
rs9385442	1.00[CHB][hapmap];0.86[JPT][hapmap];0.92[ASN][1000 genomes]
rs9398855	0.91[CHD][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830799	chr6:128033100-128194511	Genic enhancers Enhancers Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	esv1849854	chr6:128143774-128287313	Weak transcription Active TSS Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv1024516	chr6:128184182-128298278	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:128178800-128190800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr6:128179200-128190400	Weak transcription	Brain Cingulate Gyrus	brain
3	chr6:128180400-128189600	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr6:128180400-128190600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
5	chr6:128180600-128189600	Weak transcription	Brain Substantia Nigra	brain
6	chr6:128183800-128187000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
7	chr6:128184600-128186800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
8	chr6:128185400-128187400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
9	chr6:128185600-128186600	Enhancers	Fetal Intestine Large	intestine
10	chr6:128185600-128187200	Genic enhancers	Primary T helper cells PMA-I stimulated	--
11	chr6:128185800-128186600	Enhancers	Primary T killer memory cells from peripheral blood	blood
12	chr6:128185800-128186600	Enhancers	HepG2	liver
13	chr6:128186000-128186600	Genic enhancers	Primary T cells fromperipheralblood	blood
14	chr6:128186200-128186600	Genic enhancers	Primary T helper memory cells from peripheral blood 2	blood
15	chr6:128186200-128186600	Enhancers	Fetal Intestine Small	intestine
16	chr6:128186200-128187200	Enhancers	Primary T helper naive cells from peripheral blood	blood
17	chr6:128186200-128187200	Strong transcription	Fetal Thymus	thymus
18	chr6:128186200-128188400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
19	chr6:128186400-128188200	Weak transcription	Primary T helper cells fromperipheralblood	blood
20	chr6:128186400-128190800	Weak transcription	Thymus	Thymus
21	chr6:128186400-128191000	Enhancers	Primary T cells from cord blood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links