Variant report

Variant	rs9372879
Chromosome Location	chr6:128053949-128053950
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs1000066	1.00[GIH][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs1543373	1.00[EUR][1000 genomes]
rs17055105	1.00[EUR][1000 genomes]
rs17055123	1.00[EUR][1000 genomes]
rs1822997	0.82[ASN][1000 genomes]
rs270041	0.81[CHD][hapmap]
rs270044	0.81[CHD][hapmap]
rs2875995	1.00[EUR][1000 genomes]
rs4895827	1.00[EUR][1000 genomes]
rs4897235	1.00[GIH][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs61234808	1.00[EUR][1000 genomes]
rs723651	1.00[EUR][1000 genomes]
rs72618504	1.00[EUR][1000 genomes]
rs9375538	0.82[JPT][hapmap];1.00[EUR][1000 genomes]
rs9375539	1.00[GIH][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs9385443	1.00[EUR][1000 genomes]
rs9385444	1.00[EUR][1000 genomes]
rs9388600	1.00[EUR][1000 genomes]
rs9388602	1.00[GIH][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs9388607	1.00[EUR][1000 genomes]
rs9398855	0.90[CHB][hapmap];0.90[CHD][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs9398858	0.87[GIH][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs9398859	1.00[EUR][1000 genomes]
rs9402000	0.95[CHB][hapmap];0.95[JPT][hapmap];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886638	chr6:127954614-128087172	Enhancers Strong transcription Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv886639	chr6:127954614-128109244	Strong transcription Weak transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv886640	chr6:127961263-128096587	Strong transcription Weak transcription Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv886641	chr6:127971136-128085283	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv886642	chr6:127971136-128096587	Weak transcription Enhancers ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv886643	chr6:127971136-128109244	Strong transcription Enhancers Weak transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv886644	chr6:127976408-128109244	Weak transcription Genic enhancers Enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
8	nsv886645	chr6:127977160-128085283	Strong transcription Enhancers Weak transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
9	nsv886646	chr6:127977160-128087172	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
10	nsv886647	chr6:127977160-128109244	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
11	nsv886648	chr6:127983009-128109244	Enhancers Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
12	nsv830799	chr6:128033100-128194511	Genic enhancers Enhancers Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
13	nsv518548	chr6:128046713-128062827	Weak transcription Enhancers Bivalent Enhancer Strong transcription Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:128039800-128069200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
2	chr6:128045600-128069200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
3	chr6:128047200-128082400	Weak transcription	Primary T cells fromperipheralblood	blood
4	chr6:128047600-128060800	Weak transcription	Thymus	Thymus
5	chr6:128052400-128054800	Weak transcription	Primary T helper cells fromperipheralblood	blood
6	chr6:128052600-128054200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
7	chr6:128052600-128054400	Weak transcription	Primary T helper cells PMA-I stimulated	--
8	chr6:128052600-128058200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
9	chr6:128052800-128054000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
10	chr6:128053600-128055600	Enhancers	Primary T cells from cord blood	blood
11	chr6:128053600-128055600	Enhancers	Primary T helper naive cells from peripheral blood	blood
12	chr6:128053800-128054200	Genic enhancers	Primary T killer memory cells from peripheral blood	blood
13	chr6:128053800-128055200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
14	chr6:128053800-128057800	Strong transcription	Fetal Thymus	thymus

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