Variant report

Variant	rs4897235
Chromosome Location	chr6:128218305-128218306
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:128216642..128219486-chr6:128221737..128224434,2	MCF-7	breast:
2	chr6:128215641..128218449-chr6:128221466..128223378,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000172673	Chromatin interaction

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs1000066	0.90[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.93[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1543373	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs156064	0.90[CHB][hapmap];0.81[ASN][1000 genomes]
rs17055105	0.84[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17055123	0.90[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2875995	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4895827	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61234808	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs723651	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72618504	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs802704	0.90[CHB][hapmap];0.83[ASN][1000 genomes]
rs802708	0.90[CHB][hapmap];0.97[CHD][hapmap];0.85[ASN][1000 genomes]
rs802713	0.81[ASN][1000 genomes]
rs802716	0.90[CHB][hapmap];0.97[CHD][hapmap];0.83[ASN][1000 genomes]
rs802753	0.81[ASN][1000 genomes]
rs9372879	1.00[GIH][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs9375538	0.91[JPT][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9375539	0.90[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9385443	0.90[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9385444	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9388600	0.83[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9388602	0.90[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9388607	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9398855	1.00[GIH][hapmap];0.86[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs9398858	0.90[CHB][hapmap];1.00[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9398859	0.89[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9402000	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1849854	chr6:128143774-128287313	Weak transcription Active TSS Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv1024516	chr6:128184182-128298278	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:128214600-128218600	Enhancers	Dnd41	blood
2	chr6:128214800-128221400	Active TSS	Primary mononuclear cells fromperipheralblood	Blood
3	chr6:128215200-128218800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
4	chr6:128215200-128222400	Active TSS	Primary T helper cells PMA-I stimulated	--
5	chr6:128215200-128222400	Active TSS	Primary T killer naive cells fromperipheralblood	blood
6	chr6:128216000-128218800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
7	chr6:128216000-128221400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
8	chr6:128216400-128219400	Flanking Active TSS	Primary T cells from cord blood	blood
9	chr6:128216400-128221800	Active TSS	Primary T helper 17 cells PMA-I stimulated	--
10	chr6:128216800-128222200	Active TSS	Fetal Thymus	thymus
11	chr6:128217000-128221800	Active TSS	Primary T helper naive cells fromperipheralblood	blood
12	chr6:128217600-128219000	Active TSS	Primary T killer memory cells from peripheral blood	blood
13	chr6:128217600-128222200	Active TSS	Primary T cells fromperipheralblood	blood
14	chr6:128217600-128223200	Active TSS	Thymus	Thymus
15	chr6:128218000-128218800	Active TSS	Primary T helper memory cells from peripheral blood 1	blood
16	chr6:128218200-128218400	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
17	chr6:128218200-128218400	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
18	chr6:128218200-128222400	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood

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