Variant report

Variant	rs802704
Chromosome Location	chr6:128225372-128225373
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs1000066	1.00[CHB][hapmap]
rs1089649	0.90[EUR][1000 genomes]
rs1089651	0.90[EUR][1000 genomes]
rs156062	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs156063	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs156064	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs166581	0.97[EUR][1000 genomes]
rs17055105	0.95[CHB][hapmap];0.80[JPT][hapmap]
rs17055123	1.00[CHB][hapmap];0.83[JPT][hapmap]
rs198523	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs198524	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs270022	0.97[EUR][1000 genomes]
rs404528	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs413612	0.97[EUR][1000 genomes]
rs428016	0.96[CEU][hapmap];0.95[EUR][1000 genomes]
rs4897235	0.90[CHB][hapmap];0.83[ASN][1000 genomes]
rs61234808	0.81[ASN][1000 genomes]
rs699416	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs699417	0.96[CEU][hapmap];0.90[EUR][1000 genomes]
rs699418	0.91[EUR][1000 genomes]
rs699419	0.91[EUR][1000 genomes]
rs802708	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs802709	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs802712	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs802713	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs802715	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs802716	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs802752	0.89[EUR][1000 genomes]
rs802753	0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs802755	0.88[EUR][1000 genomes]
rs802756	0.90[EUR][1000 genomes]
rs9375538	0.90[CHB][hapmap]
rs9375539	1.00[CHB][hapmap];0.82[ASN][1000 genomes]
rs9385443	1.00[CHB][hapmap]
rs9388600	0.95[CHB][hapmap]
rs9388602	1.00[CHB][hapmap]
rs9398858	1.00[CHB][hapmap]
rs9398859	1.00[CHB][hapmap];0.80[JPT][hapmap];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1849854	chr6:128143774-128287313	Weak transcription Active TSS Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv1024516	chr6:128184182-128298278	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:128222600-128225600	Enhancers	Fetal Thymus	thymus
2	chr6:128222600-128226400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
3	chr6:128222600-128228600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
4	chr6:128222800-128226000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
5	chr6:128222800-128226400	Enhancers	Primary T killer memory cells from peripheral blood	blood
6	chr6:128222800-128226800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
7	chr6:128222800-128227000	Enhancers	Primary T helper cells fromperipheralblood	blood
8	chr6:128223200-128225600	Enhancers	Primary T cells from cord blood	blood
9	chr6:128223600-128228600	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
10	chr6:128224000-128235600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
11	chr6:128224400-128226000	Enhancers	Primary T helper naive cells from peripheral blood	blood
12	chr6:128224400-128228600	Enhancers	Primary T helper cells PMA-I stimulated	--
13	chr6:128224800-128225600	Enhancers	Primary T cells fromperipheralblood	blood
14	chr6:128225000-128225800	Enhancers	Fetal Heart	heart
15	chr6:128225200-128225400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood

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