Variant report

Variant	rs270022
Chromosome Location	chr6:128210186-128210187
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs1089649	0.88[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1089651	0.93[EUR][1000 genomes]
rs156062	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs156063	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs156064	0.97[EUR][1000 genomes]
rs166581	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs198523	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs198524	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs404528	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs413612	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs428016	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs699416	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs699417	0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs699418	0.91[AFR][1000 genomes];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs699419	0.91[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs802704	0.97[EUR][1000 genomes]
rs802708	0.94[EUR][1000 genomes]
rs802709	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs802712	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs802713	0.88[EUR][1000 genomes]
rs802715	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs802716	0.91[EUR][1000 genomes]
rs802752	0.89[EUR][1000 genomes]
rs802753	0.87[EUR][1000 genomes]
rs802755	0.91[AFR][1000 genomes];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs802756	0.91[AFR][1000 genomes];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1849854	chr6:128143774-128287313	Weak transcription Active TSS Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv1024516	chr6:128184182-128298278	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:128196600-128211600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
2	chr6:128201000-128214600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr6:128206200-128212400	Strong transcription	Fetal Thymus	thymus
4	chr6:128207600-128213000	Genic enhancers	Primary T helper cells PMA-I stimulated	--
5	chr6:128208000-128210400	Weak transcription	Primary T cells fromperipheralblood	blood
6	chr6:128208000-128212800	Weak transcription	Thymus	Thymus
7	chr6:128208800-128210400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
8	chr6:128209200-128210200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
9	chr6:128209200-128210400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
10	chr6:128209400-128210200	Weak transcription	Primary T cells from cord blood	blood
11	chr6:128209400-128210200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
12	chr6:128209400-128210800	Enhancers	Dnd41	blood
13	chr6:128209400-128212200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
14	chr6:128209600-128210400	Weak transcription	Primary T helper cells fromperipheralblood	blood
15	chr6:128210000-128210600	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
16	chr6:128210000-128214400	Enhancers	Primary T killer naive cells fromperipheralblood	blood

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