Variant report

Variant	rs802752
Chromosome Location	chr6:128263434-128263435
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs1000066	0.85[CHB][hapmap]
rs1089649	0.94[EUR][1000 genomes]
rs1089651	0.94[EUR][1000 genomes]
rs156062	1.00[CEU][hapmap];0.85[YRI][hapmap];0.89[EUR][1000 genomes]
rs156063	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs156064	1.00[CEU][hapmap];0.85[CHB][hapmap];0.87[JPT][hapmap];0.89[EUR][1000 genomes]
rs166581	0.88[EUR][1000 genomes]
rs17055123	0.85[CHB][hapmap]
rs198523	1.00[CEU][hapmap];0.84[YRI][hapmap];0.86[EUR][1000 genomes]
rs198524	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs270022	0.89[EUR][1000 genomes]
rs404528	1.00[CEU][hapmap];0.85[YRI][hapmap];0.88[EUR][1000 genomes]
rs413612	0.89[EUR][1000 genomes]
rs428016	0.96[CEU][hapmap];0.85[YRI][hapmap];0.87[EUR][1000 genomes]
rs699416	1.00[CEU][hapmap];0.85[YRI][hapmap];0.89[EUR][1000 genomes]
rs699417	0.96[CEU][hapmap];0.88[EUR][1000 genomes]
rs699418	0.95[EUR][1000 genomes]
rs699419	0.95[EUR][1000 genomes]
rs802704	1.00[CEU][hapmap];0.85[CHB][hapmap];0.87[JPT][hapmap];0.89[EUR][1000 genomes]
rs802708	1.00[CEU][hapmap];0.85[CHB][hapmap];0.86[JPT][hapmap];0.86[EUR][1000 genomes]
rs802709	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs802712	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs802713	0.92[EUR][1000 genomes]
rs802715	1.00[CEU][hapmap];0.85[YRI][hapmap];0.89[EUR][1000 genomes]
rs802716	1.00[CEU][hapmap];0.85[CHB][hapmap];0.86[JPT][hapmap];0.90[EUR][1000 genomes]
rs802753	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs802755	0.92[EUR][1000 genomes]
rs802756	0.94[EUR][1000 genomes]
rs9375539	0.85[CHB][hapmap]
rs9385443	0.85[CHB][hapmap]
rs9388602	0.85[CHB][hapmap]
rs9398858	0.85[CHB][hapmap]
rs9398859	0.85[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1849854	chr6:128143774-128287313	Weak transcription Active TSS Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv1024516	chr6:128184182-128298278	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:128254200-128271400	Weak transcription	Thymus	Thymus
2	chr6:128261400-128264200	Weak transcription	Primary T helper cells PMA-I stimulated	--
3	chr6:128261400-128271200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
4	chr6:128263400-128263600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood

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