Variant report

Variant	rs61234808
Chromosome Location	chr6:128233312-128233313
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs1000066	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1543373	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17055105	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17055123	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2875995	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4895827	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4897235	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs723651	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72618504	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs802704	0.81[ASN][1000 genomes]
rs802708	0.85[ASN][1000 genomes]
rs802713	0.83[ASN][1000 genomes]
rs802716	0.85[ASN][1000 genomes]
rs802753	0.83[ASN][1000 genomes]
rs9372879	1.00[EUR][1000 genomes]
rs9375538	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9375539	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9385443	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9385444	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9388600	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9388602	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9388607	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9398855	1.00[EUR][1000 genomes]
rs9398858	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9398859	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9402000	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1849854	chr6:128143774-128287313	Weak transcription Active TSS Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv1024516	chr6:128184182-128298278	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:128224000-128235600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
2	chr6:128230000-128235600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
3	chr6:128231000-128233600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
4	chr6:128232800-128233400	Enhancers	Primary T helper cells PMA-I stimulated	--
5	chr6:128232800-128233400	ZNF genes & repeats	Primary T killer naive cells fromperipheralblood	blood
6	chr6:128232800-128233800	Strong transcription	Primary T cells fromperipheralblood	blood
7	chr6:128233000-128233800	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
8	chr6:128233000-128234600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
9	chr6:128233200-128233800	Genic enhancers	Primary T helper memory cells from peripheral blood 2	blood
10	chr6:128233200-128234800	Weak transcription	Primary T cells from cord blood	blood
11	chr6:128233200-128235200	Enhancers	Primary T helper naive cells from peripheral blood	blood
12	chr6:128233200-128238400	Weak transcription	Fetal Thymus	thymus

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